JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SBF1_chr22_50440000_50480035	0/0	t0146	2340	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0147	2322	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0148	2322	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0149	2335	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0150	2339	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0151	2337	1	0	0	0	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0152	2335	1	0	0	0	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0153	2328	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0154	2335	1	0	0	0	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0155	2333	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0156	2328	1	0	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0157	2335	1	0	0	0	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0158	2313	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0159	2329	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0160	2336	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0161	2336	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0162	2338	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0163	2328	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0164	2328	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0165	2329	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0166	2317	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0167	2346	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0168	2329	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0169	2334	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0170	2335	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0171	2336	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0172	2329	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0173	2337	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0174	2335	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0175	2336	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0176	2338	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0177	2331	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0178	2339	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	t0179	2328	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF2_chr11_9773668_10299219	0/0	t0001	1901	67	22	20	17	2	6	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	1/0	t0002	1901	59	5	18	23	2	10	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	t0003	1901	34	5	6	23	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/1	t0004	1901	28	4	12	0	4	7	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	t0005	1901	15	10	4	0	0	1	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	t0006	1901	3	3	0	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	t0007	1901	3	2	1	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	t0008	1901	2	0	0	2	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	t0009	1901	2	2	0	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	t0010	1901	2	2	0	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	t0011	1901	2	2	0	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	t0012	1901	1	0	0	1	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	t0013	1901	1	1	0	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	t0014	1901	1	0	1	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	t0015	1901	1	1	0	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	t0016	1901	1	1	0	0	0	0	copy fasta	SBF2	chr11	9773668	10299219