JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SBK1_chr16_28287525_28328849	0/0	t0049	3708	2	0	0	2	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0050	3714	2	0	0	2	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0051	3680	2	2	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0052	3688	2	2	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0053	3686	2	2	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0054	3678	2	2	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0055	3676	2	0	0	2	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0056	3682	2	1	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0057	3675	2	0	0	0	0	2	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0058	3672	1	0	0	0	0	1	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0059	3667	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0060	3700	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0061	3723	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0062	3706	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0063	3734	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0064	3710	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0065	3712	1	0	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0066	3714	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0067	3716	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0068	3720	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0069	3719	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0070	3702	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0071	3706	1	0	0	0	0	1	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0072	3710	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0073	3723	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0074	3716	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0075	3698	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0076	3706	1	0	0	0	0	1	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0077	3712	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0078	3715	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0079	3728	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0080	3696	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0081	3698	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0082	3716	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0083	3718	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0084	3714	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0085	3702	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0086	3716	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0087	3720	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0088	3694	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0089	3700	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0090	3702	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0091	3704	1	0	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0092	3706	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0093	3710	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0094	3712	1	0	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0095	3714	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0096	3704	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0097	3694	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0098	3702	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849