JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	tseq	genename	chr	start	end
SBK1_chr16_28287525_28328849	0/0	t0099	3716	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0100	3698	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0101	3712	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0102	3709	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0103	3715	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0104	3700	1	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0105	3715	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0106	3690	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0107	3686	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0108	3702	1	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0109	3710	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0110	3694	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0111	3700	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0112	3704	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0113	3722	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0114	3702	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0115	3712	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0116	3688	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0117	3692	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0118	3712	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0119	3682	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0120	3700	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0121	3704	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0122	3706	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0123	3710	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0124	3692	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0125	3678	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0126	3680	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0127	3698	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0128	3700	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0129	3704	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0130	3706	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0131	3708	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0132	3688	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0133	3690	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0134	3696	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0135	3701	1	0	0	0	1	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0136	3678	1	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0137	3707	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0138	3676	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0139	3688	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0140	3696	1	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0141	3676	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0142	3668	1	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0143	3670	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0144	3680	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0145	3682	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0146	3666	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0147	3680	1	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0148	3673	1	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849