JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SBK1_chr16_28287525_28328849	0/0	t0149	3669	1	0	0	0	0	1	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0150	3688	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0151	3686	1	0	0	0	0	1	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0152	3684	1	0	0	0	0	1	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0153	3660	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0154	3690	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0155	3694	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0156	3696	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0157	3692	1	0	0	0	0	1	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0158	3696	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0159	3678	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0160	3694	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0161	3694	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0162	3674	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0163	3676	1	0	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0164	3675	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0165	3668	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0166	3670	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0167	3678	1	0	0	0	0	1	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0168	3681	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0169	3666	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0170	3668	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0171	3671	1	0	0	0	0	1	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0172	3677	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0173	3676	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0174	3678	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0175	3674	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0176	3694	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0177	3692	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0178	3672	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0179	3676	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0180	3678	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0181	3688	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0182	3672	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0183	3689	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0184	3694	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0185	3678	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0186	3698	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0187	3675	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0188	3677	1	0	0	0	0	1	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0189	3675	1	0	0	0	1	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0190	3667	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0191	3665	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0192	3698	1	1	0	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0193	3698	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0194	3664	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0195	3674	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0196	3666	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0197	3678	1	0	0	0	0	1	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	t0198	3668	1	0	0	1	0	0	copy fasta	SBK1	chr16	28287525	28328849