Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BAG3_chr10_119646380_119682819	1/0	t0001	834	149	42	14	67	5	20	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	t0002	832	72	9	11	48	0	4	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	t0003	831	57	12	15	26	1	3	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/1	t0004	831	52	10	14	15	5	7	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	t0005	831	51	16	18	0	3	14	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	t0006	834	24	8	1	15	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	t0007	832	7	0	0	7	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	t0008	829	3	0	2	0	0	1	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	t0009	829	2	0	0	2	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	t0010	831	1	0	0	0	0	1	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	t0011	834	1	1	0	0	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	t0012	832	1	0	1	0	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG4_chr8_38171855_38218301	1/0	t0001	2824	116	33	24	42	3	13	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0002	2824	84	11	16	50	4	3	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0003	2825	40	4	9	22	1	4	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/1	t0004	2824	16	2	4	7	2	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0005	2826	8	0	4	4	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0006	2825	7	0	0	6	1	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0007	2825	5	4	0	1	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0008	2826	5	5	0	0	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0009	2823	3	1	0	1	1	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0010	2824	3	3	0	0	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0011	2823	2	1	0	1	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0012	2827	2	1	1	0	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0013	2804	1	0	0	1	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0014	2824	1	0	0	1	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0015	2823	1	0	0	1	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0016	2824	1	0	0	1	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0017	2824	1	1	0	0	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0018	2824	1	0	0	1	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0019	2824	1	1	0	0	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0020	2825	1	0	0	1	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0021	2825	1	0	0	1	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0022	2825	1	0	0	1	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0023	2825	1	0	0	1	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0024	2824	1	1	0	0	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0025	2824	1	0	0	1	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0026	2824	1	1	0	0	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	t0027	2826	1	1	0	0	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG5_chr14_103551551_103567657	1/0	t0001	3341	148	16	27	79	5	20	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0002	3340	102	6	20	59	3	14	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/1	t0003	3340	76	7	18	30	8	12	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0004	3340	17	16	1	0	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0005	3341	15	14	1	0	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0006	3340	11	11	0	0	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0007	3341	7	7	0	0	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0008	3341	6	3	2	1	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0009	3341	3	3	0	0	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0010	3341	3	0	0	3	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0011	3340	2	0	0	2	0	0	copy fasta	BAG5	chr14	103551551	103567657