JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SBK2_chr19_55523611_55542133	0/0	t0001	1205	100	23	17	43	2	15	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/1	t0002	1205	71	6	20	21	9	14	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0003	1198	62	4	4	47	2	5	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0004	1205	42	4	11	27	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	1/0	t0005	1205	30	7	2	19	0	1	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0006	1198	13	0	1	7	0	5	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0007	1205	10	0	2	6	1	1	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0008	1205	9	4	3	2	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0009	1205	8	0	4	4	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0010	1205	7	0	1	6	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0011	1198	7	3	0	4	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0012	1205	7	1	5	0	1	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0013	1198	6	1	0	2	1	2	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0014	1205	4	4	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0015	1198	4	1	0	0	2	1	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0016	1205	4	4	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0017	1198	3	0	3	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0018	1198	3	0	0	0	0	3	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0019	1205	3	0	3	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0020	1477	3	3	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0021	1198	3	0	1	2	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0022	1205	3	3	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0023	1198	3	2	1	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0024	1198	3	2	1	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0025	1205	3	3	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0026	1205	3	3	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0027	1205	2	0	0	2	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0028	1205	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0029	1205	1	0	1	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0030	1205	1	0	0	1	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0031	1205	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0032	1205	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0033	1198	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0034	1205	1	0	0	1	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0035	1205	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0036	1205	1	0	0	1	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0037	1205	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0038	1205	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0039	1198	1	0	0	0	0	1	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0040	1198	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0041	1205	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0042	1205	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0043	1205	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0044	1477	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	t0045	1125	1	0	0	1	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK3_chr19_55535656_55550543	1/1	t0001	191	431	93	78	192	18	48	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	t0002	191	4	0	0	4	0	0	copy fasta	SBK3	chr19	55535656	55550543
SBK3_chr19_55535656_55550543	0/0	t0003	191	3	3	0	0	0	0	copy fasta	SBK3	chr19	55535656	55550543
SBNO1_chr12_123284109_123369847	0/0	t0001	6944	42	1	6	30	0	5	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/1	t0002	6946	20	1	10	0	1	7	copy fasta	SBNO1	chr12	123284109	123369847