JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SBNO1_chr12_123284109_123369847	0/0	t0003	6933	20	0	4	13	0	3	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0004	6945	12	0	8	1	3	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0005	6955	9	8	1	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0006	6938	8	7	1	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0007	6945	7	0	2	2	0	3	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0008	6945	6	0	0	2	0	4	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0009	6933	6	0	0	6	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0010	6945	5	0	2	1	1	1	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0011	6945	4	2	1	0	0	1	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0012	6938	4	4	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0013	6943	4	0	2	1	0	1	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0014	6943	4	4	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0015	6937	3	3	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0016	6939	3	3	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0017	6943	3	0	0	2	0	1	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0018	6946	3	0	1	1	1	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0019	6945	3	3	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0020	6946	3	3	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0021	6934	3	0	0	3	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0022	6937	3	0	0	3	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0023	6954	2	2	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0024	6938	2	2	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0025	6939	2	1	1	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0026	6939	2	2	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0027	6944	2	0	2	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0028	6943	2	0	2	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0029	6945	2	0	0	2	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0030	6943	2	2	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0031	6945	2	0	2	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0032	6946	2	2	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0033	6947	2	0	0	0	0	2	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0034	6938	2	1	1	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0035	6944	1	0	1	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0036	6945	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0037	6944	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0038	6944	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0039	6944	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0040	6945	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0041	6946	1	0	1	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0042	6944	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0043	6947	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0044	6948	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0045	6949	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0046	6936	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0047	6937	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0048	6940	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0049	6940	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0050	6941	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0051	6944	1	0	1	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0052	6945	1	0	1	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847