JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SBNO1_chr12_123284109_123369847	0/0	t0053	6944	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0054	6944	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0055	6944	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0056	6944	1	0	1	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0057	6944	1	0	1	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0058	6942	1	0	1	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0059	6944	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0060	6945	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0061	6945	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0062	6944	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0063	6946	1	0	0	0	0	1	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0064	6946	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0065	6945	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0066	6944	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0067	6944	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0068	6945	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0069	6945	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0070	6946	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0071	6947	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0072	6944	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0073	6945	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0074	6945	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0075	6946	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0076	6946	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0077	6947	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0078	6946	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0079	6945	1	0	1	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0080	6946	1	0	1	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0081	6946	1	0	0	0	1	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0082	6947	1	0	0	0	1	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0083	6937	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0084	6944	1	0	1	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0085	6938	1	1	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0086	6934	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	1/0	t0087	6947	1	0	0	0	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0088	6938	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0089	6936	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0090	6934	1	0	0	0	0	1	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0091	6938	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0092	6933	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0093	6933	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0094	6934	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO1_chr12_123284109_123369847	0/0	t0095	6933	1	0	0	1	0	0	copy fasta	SBNO1	chr12	123284109	123369847
SBNO2_chr19_1102638_1179268	0/1	t0001	806	183	59	50	47	6	20	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	t0002	806	5	5	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	t0003	807	3	0	0	2	1	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	t0004	806	2	0	0	2	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	t0005	806	2	2	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	t0006	806	2	2	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	t0007	807	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268