JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SBNO2_chr19_1102638_1179268	0/0	t0008	806	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	t0009	806	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	t0010	806	1	0	0	1	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	t0011	806	1	1	0	0	0	0	copy fasta	SBNO2	chr19	1102638	1179268
SBNO2_chr19_1102638_1179268	0/0	t0012	806	1	0	0	0	1	0	copy fasta	SBNO2	chr19	1102638	1179268
SBSN_chr19_35518367_35533311	1/1	t0001	174	440	84	86	204	16	48	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	t0002	174	10	10	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSPON_chr8_73059543_73098172	1/1	t0001	2904	176	9	37	113	4	11	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0002	2905	46	9	8	14	1	14	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0003	2905	37	8	10	8	1	10	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0004	2903	19	8	1	10	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0005	2903	17	0	2	13	0	2	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0006	2905	12	8	2	0	1	1	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0007	2903	12	0	6	0	3	3	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0008	2904	12	11	1	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0009	2905	11	5	3	0	2	1	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0010	2903	8	0	0	8	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0011	2905	7	7	0	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0012	2904	6	5	1	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0013	2903	6	6	0	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0014	2904	5	1	1	1	0	2	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0015	2904	5	5	0	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0016	2902	5	0	0	5	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0017	2904	4	0	0	4	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0018	2904	3	0	3	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0019	2904	3	0	2	0	1	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0020	2904	2	2	0	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0021	2904	2	1	0	1	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0022	2904	1	1	0	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0023	2905	1	1	0	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0024	2904	1	1	0	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0025	2905	1	1	0	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0026	2905	1	1	0	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0027	2904	1	1	0	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0028	2903	1	1	0	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0029	2902	1	0	0	1	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0030	2905	1	0	1	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0031	2905	1	1	0	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0032	2905	1	1	0	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0033	2905	1	0	0	0	1	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0034	2904	1	0	1	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0035	2904	1	0	1	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0036	2904	1	1	0	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	t0037	2905	1	1	0	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SC5D_chr11_121287771_121318410	0/0	t0001	5954	113	17	29	49	4	14	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	1/1	t0002	5955	98	18	12	51	4	11	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0003	5955	63	3	7	47	1	5	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0004	5955	36	6	6	20	0	4	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0005	5957	14	13	1	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0006	5954	9	8	1	0	0	0	copy fasta	SC5D	chr11	121287771	121318410