JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SC5D_chr11_121287771_121318410	0/0	t0007	5953	7	0	7	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0008	5956	7	3	0	4	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0009	5956	6	0	1	3	0	2	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0010	5955	5	1	1	0	3	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0011	5955	5	0	0	4	0	1	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0012	5955	4	3	1	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0013	5955	3	0	0	0	0	3	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0014	5955	3	3	0	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0015	5955	3	3	0	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0016	5954	3	0	0	3	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0017	5955	3	2	1	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0018	5955	2	0	0	2	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0019	5957	2	2	0	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0020	5956	2	2	0	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0021	5954	2	0	0	2	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0022	5954	2	2	0	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0023	5955	2	2	0	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0024	5955	2	1	1	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0025	5955	1	0	0	1	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0026	5955	1	0	0	0	0	1	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0027	5955	1	0	0	1	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0028	5954	1	0	0	1	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0029	5954	1	0	0	0	0	1	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0030	5955	1	0	0	1	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0031	5955	1	1	0	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0032	5955	1	1	0	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0033	5955	1	1	0	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0034	5956	1	0	0	1	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0035	5955	1	0	0	1	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0036	5954	1	0	0	1	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0037	5954	1	0	0	0	0	1	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0038	5955	1	0	0	1	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0039	5955	1	0	0	1	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0040	5955	1	1	0	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0041	5955	1	0	0	1	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0042	5956	1	1	0	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0043	5955	1	1	0	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0044	5955	1	0	0	0	0	1	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0045	5954	1	1	0	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0046	5956	1	0	0	1	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0047	5954	1	0	1	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0048	5954	1	0	1	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0049	5955	1	1	0	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0050	5955	1	0	0	1	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0051	5955	1	1	0	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	t0052	5954	1	0	0	1	0	0	copy fasta	SC5D	chr11	121287771	121318410
SCAF11_chr12_45914131_45995574	0/1	t0001	3161	110	17	24	50	3	15	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	t0002	3161	102	6	13	63	5	15	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	t0003	3161	94	45	24	20	3	2	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	t0004	3161	5	0	0	0	0	5	copy fasta	SCAF11	chr12	45914131	45995574