JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCAF11_chr12_45914131_45995574	0/0	t0005	3161	5	0	2	0	0	3	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	t0006	3161	5	5	0	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	t0007	3161	5	0	0	5	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	t0008	3161	2	2	0	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	t0009	3161	2	1	1	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	t0010	3161	2	1	1	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	t0011	3161	1	0	1	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	t0012	3161	1	0	0	1	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	t0013	3161	1	1	0	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	t0014	3161	1	0	0	1	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	t0015	3161	1	0	0	1	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	t0016	3161	1	0	0	1	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	t0017	3161	1	0	0	0	1	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	t0018	3161	1	0	1	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	1/0	t0019	3161	1	0	0	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	t0020	3161	1	0	1	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	t0021	3161	1	0	0	1	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	t0022	3161	1	0	0	1	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF1_chr19_49637209_49663642	1/0	t0001	284	215	22	56	101	11	24	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/1	t0002	284	164	66	24	51	5	17	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	t0003	284	1	1	0	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	t0004	284	1	0	0	0	0	1	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	t0005	284	1	1	0	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF4_chr21_31666000_31737118	1/1	t0001	826	312	69	61	137	9	34	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	t0002	825	20	5	4	11	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	t0003	822	10	0	5	0	0	5	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	t0004	827	6	0	2	2	1	1	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	t0005	826	1	1	0	0	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	t0006	827	1	1	0	0	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	t0007	826	1	0	1	0	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	t0008	826	1	0	1	0	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF8_chr6_154728416_154839221	1/0	t0001	1312	172	51	24	67	8	21	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/1	t0002	1312	84	26	29	18	3	7	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	t0003	1312	9	8	1	0	0	0	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	t0004	1313	8	0	7	0	1	0	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	t0005	1312	3	0	0	0	0	3	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	t0006	1298	2	0	0	2	0	0	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	t0007	1312	1	1	0	0	0	0	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	t0008	1312	1	0	0	1	0	0	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	t0009	1300	1	0	0	0	0	1	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	t0010	1313	1	0	1	0	0	0	copy fasta	SCAF8	chr6	154728416	154839221
SCAI_chr9_124937608_125148528	1/1	t0001	10291	60	11	5	32	3	7	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0002	10290	43	8	10	18	1	6	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0003	10291	28	2	0	24	0	2	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0004	10294	16	0	4	7	3	2	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0005	10291	9	0	5	4	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0006	10291	9	2	5	1	0	1	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0007	10292	9	0	3	6	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0008	10291	7	4	3	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0009	10289	6	4	1	1	0	0	copy fasta	SCAI	chr9	124937608	125148528