JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCAI_chr9_124937608_125148528	0/0	t0010	10294	6	5	1	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0011	10290	5	0	0	5	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0012	10294	4	3	1	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0013	10291	4	0	0	4	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0014	10290	4	0	2	2	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0015	10294	3	2	1	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0016	10295	3	0	0	3	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0017	10290	3	0	2	0	1	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0018	10289	3	3	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0019	10291	3	0	0	1	0	2	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0020	10292	3	0	0	2	0	1	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0021	10290	3	2	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0022	10290	2	0	0	2	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0023	10292	2	0	1	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0024	10295	2	2	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0025	10294	2	2	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0026	10290	2	2	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0027	10291	2	1	1	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0028	10289	2	1	1	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0029	10288	2	2	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0030	10293	2	0	0	2	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0031	10295	2	0	0	1	0	1	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0032	10292	2	0	0	2	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0033	10294	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0034	10293	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0035	10291	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0036	10288	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0037	10290	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0038	10289	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0039	10290	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0040	10290	1	0	1	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0041	10290	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0042	10292	1	0	0	0	0	1	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0043	10291	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0044	10291	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0045	10291	1	0	0	0	0	1	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0046	10294	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0047	10291	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0048	10296	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0049	10294	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0050	10290	1	0	0	0	0	1	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0051	10289	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0052	10291	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0053	10290	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0054	10291	1	0	1	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0055	10291	1	0	1	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0056	10290	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0057	10291	1	0	1	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0058	10289	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0059	10292	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528