JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCAI_chr9_124937608_125148528	0/0	t0060	10294	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0061	10291	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0062	10291	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0063	10293	1	0	1	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0064	10290	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0065	10292	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0066	10290	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0067	10290	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0068	10294	1	0	1	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0069	10295	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0070	10292	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0071	10293	1	0	0	0	0	1	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0072	10291	1	0	1	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0073	10293	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0074	10292	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0075	10291	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0076	10291	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0077	10290	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0078	10290	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0079	10291	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0080	10293	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0081	10291	1	1	0	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0082	10291	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0083	10292	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0084	10295	1	0	0	1	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	t0085	10291	1	0	1	0	0	0	copy fasta	SCAI	chr9	124937608	125148528
SCAMP1_chr5_78355617_78485739	0/0	t0001	5128	74	11	9	43	4	7	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0002	5127	61	12	18	16	5	10	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0003	5128	57	7	1	45	0	4	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0004	5127	37	1	8	19	4	5	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0005	5129	14	11	3	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0006	5128	11	9	2	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0007	5128	10	9	1	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0008	5128	7	7	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0009	5127	5	0	5	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0010	5128	5	5	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0011	5128	4	3	0	0	0	1	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0012	5128	4	0	4	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0013	5127	4	0	0	0	0	4	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0014	5128	3	0	0	2	1	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0015	5127	2	2	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0016	5127	2	2	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0017	5128	2	2	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0018	5128	2	2	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0019	5128	2	0	0	2	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0020	5127	2	2	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0021	5127	2	0	2	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0022	5128	2	2	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0023	5128	1	1	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0024	5127	1	1	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739