JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCAMP1_chr5_78355617_78485739	0/0	t0025	5127	1	0	1	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0026	5129	1	0	1	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0027	5127	1	1	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0028	5127	1	1	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0029	5128	1	1	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0030	5129	1	1	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0031	5129	1	1	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0032	5127	1	1	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0033	5127	1	1	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0034	5127	1	0	0	0	0	1	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0035	5128	1	1	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0036	5127	1	1	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0037	5086	1	0	0	1	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0038	5129	1	0	0	1	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0039	5128	1	0	0	1	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0040	5127	1	0	1	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0041	5128	1	0	0	1	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	t0042	5128	1	0	0	1	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP2_chr15_74838730_74878365	1/0	t0001	1464	118	43	8	52	5	9	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0002	1464	50	2	8	37	0	3	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/1	t0003	1464	37	4	12	8	8	4	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0004	1467	25	0	7	13	2	3	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0005	1465	21	4	6	7	0	4	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0006	1468	19	0	6	11	1	1	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0007	1464	18	9	5	4	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0008	1466	13	2	3	7	0	1	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0009	1465	10	2	0	8	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0010	1466	9	8	1	0	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0011	1465	8	7	1	0	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0012	1465	8	0	0	8	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0013	1464	6	0	0	4	1	1	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0014	1465	6	1	0	4	0	1	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0015	1464	4	0	1	3	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0016	1464	4	0	0	2	0	2	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0017	1465	3	0	0	3	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0018	1465	3	1	0	1	0	1	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0019	1465	3	0	1	0	1	1	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0020	1464	2	0	2	0	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0021	1464	2	0	0	2	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0022	1466	2	0	0	2	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0023	1465	2	0	0	1	0	1	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0024	1464	1	1	0	0	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0025	1466	1	1	0	0	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0026	1466	1	1	0	0	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0027	1468	1	0	0	0	0	1	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0028	1467	1	1	0	0	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0029	1464	1	0	0	1	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0030	1464	1	0	1	0	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0031	1464	1	1	0	0	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0032	1464	1	0	1	0	0	0	copy fasta	SCAMP2	chr15	74838730	74878365