JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCAMP2_chr15_74838730_74878365	0/0	t0033	1464	1	0	0	1	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0034	1464	1	0	0	0	0	1	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0035	1465	1	0	1	0	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	t0036	1466	1	0	0	1	0	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP3_chr1_155250981_155267360	0/0	t0001	502	185	47	22	92	5	19	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/1	t0002	502	167	43	27	57	12	27	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	t0003	500	14	0	0	14	0	0	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	t0004	500	5	5	0	0	0	0	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	t0005	502	2	0	1	0	1	0	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	t0006	502	1	0	0	1	0	0	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	t0007	502	1	1	0	0	0	0	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP4_chr19_1900399_1931013	0/0	t0001	1812	190	52	32	76	6	24	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0002	1810	129	5	29	67	9	19	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	1/0	t0003	1812	19	0	4	12	0	2	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0004	1812	16	0	6	9	0	1	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0005	1812	16	4	4	6	0	2	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0006	1810	12	4	1	7	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0007	1814	6	5	1	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0008	1812	5	5	0	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0009	1812	5	5	0	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0010	1812	4	4	0	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0011	1811	3	0	0	3	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0012	1812	3	0	0	3	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0013	1812	3	3	0	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0014	1812	3	0	0	3	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0015	1812	3	1	0	0	2	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0016	1812	2	2	0	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0017	1812	2	0	0	2	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/1	t0018	1810	2	0	0	1	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0019	1813	1	1	0	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0020	1812	1	0	0	1	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0021	1812	1	1	0	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0022	1812	1	1	0	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0023	1810	1	0	0	0	0	1	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0024	1812	1	0	0	1	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0025	1810	1	0	1	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0026	1810	1	0	1	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0027	1812	1	0	0	1	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0028	1812	1	0	0	0	0	1	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0029	1812	1	0	0	1	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0030	1812	1	0	0	0	1	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0031	1814	1	1	0	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0032	1810	1	1	0	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0033	1811	1	0	0	1	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0034	1810	1	0	0	1	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0035	1812	1	1	0	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0036	1812	1	0	0	1	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	t0037	1812	1	0	1	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP5_chr15_74990563_75026495	1/1	t0001	2672	198	53	46	67	12	18	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	t0002	2672	79	0	10	56	3	10	copy fasta	SCAMP5	chr15	74990563	75026495