Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BAG5_chr14_103551551_103567657	0/0	t0012	3341	2	0	0	2	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0013	3341	2	0	2	0	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0014	3340	2	0	0	2	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0015	3340	2	2	0	0	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0016	3340	2	2	0	0	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0017	3341	1	0	0	1	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0018	3341	1	1	0	0	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0019	3341	1	0	0	1	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0020	3341	1	1	0	0	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0021	3341	1	0	0	1	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0022	3341	1	1	0	0	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0023	3341	1	0	0	1	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0024	3340	1	0	1	0	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0025	3340	1	1	0	0	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	t0026	3341	1	1	0	0	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG6_chr6_31634028_31657661	0/1	t0001	355	379	71	71	185	13	38	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	t0002	359	45	21	8	5	5	6	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	t0003	355	1	0	0	1	0	0	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	t0004	355	1	0	1	0	0	0	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	t0005	355	1	0	0	1	0	0	copy fasta	BAG6	chr6	31634028	31657661
BAHCC1_chr17_81390457_81471331	0/0	t0001	2900	128	25	25	66	1	11	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/1	t0002	2900	62	19	27	1	5	9	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	1/0	t0003	2900	45	0	5	35	3	1	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0004	2900	26	7	6	5	1	7	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0005	2900	8	0	0	6	0	2	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0006	2900	6	0	3	0	0	3	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0007	2900	6	3	0	0	0	3	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0008	2900	6	0	2	4	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0009	2900	4	4	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0010	2900	4	3	1	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0011	2900	3	3	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0012	2900	3	0	0	0	0	3	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0013	2900	3	3	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0014	2900	2	1	0	0	1	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0015	2900	2	2	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0016	2900	2	2	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0017	2900	1	0	0	0	0	1	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0018	2900	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0019	2900	1	0	0	0	1	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0020	2900	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0021	2900	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0022	2900	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0023	2900	1	0	0	0	0	1	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0024	2900	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0025	2900	1	0	1	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0026	2900	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0027	2900	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0028	2900	1	0	1	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0029	2900	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0030	2900	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331