JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCAMP5_chr15_74990563_75026495	0/0	t0003	2676	39	5	1	33	0	0	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	t0004	2672	20	20	0	0	0	0	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	t0005	2674	12	0	6	0	0	6	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	t0006	2674	4	2	2	0	0	0	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	t0007	2674	3	0	1	0	1	1	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	t0008	2672	3	0	0	3	0	0	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	t0009	2674	1	0	0	0	0	1	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	t0010	2674	1	0	0	0	0	1	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	t0011	2674	1	1	0	0	0	0	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	t0012	2672	1	1	0	0	0	0	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	t0013	2672	1	0	0	0	0	1	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	t0014	2672	1	0	0	1	0	0	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	t0015	2672	1	0	0	1	0	0	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	t0016	2672	1	1	0	0	0	0	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	t0017	2672	1	1	0	0	0	0	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	t0018	2672	1	1	0	0	0	0	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	t0019	2672	1	0	0	1	0	0	copy fasta	SCAMP5	chr15	74990563	75026495
SCAMP5_chr15_74990563_75026495	0/0	t0020	2676	1	1	0	0	0	0	copy fasta	SCAMP5	chr15	74990563	75026495
SCAND1_chr20_35948624_35959502	1/1	t0001	232	355	79	71	146	14	43	copy fasta	SCAND1	chr20	35948624	35959502
SCAND1_chr20_35948624_35959502	0/0	t0002	232	8	0	2	6	0	0	copy fasta	SCAND1	chr20	35948624	35959502
SCAND1_chr20_35948624_35959502	0/0	t0003	232	3	3	0	0	0	0	copy fasta	SCAND1	chr20	35948624	35959502
SCAND1_chr20_35948624_35959502	0/0	t0004	232	2	2	0	0	0	0	copy fasta	SCAND1	chr20	35948624	35959502
SCAND1_chr20_35948624_35959502	0/0	t0005	232	2	2	0	0	0	0	copy fasta	SCAND1	chr20	35948624	35959502
SCAND1_chr20_35948624_35959502	0/0	t0006	232	2	0	0	2	0	0	copy fasta	SCAND1	chr20	35948624	35959502
SCAND1_chr20_35948624_35959502	0/0	t0007	232	1	0	1	0	0	0	copy fasta	SCAND1	chr20	35948624	35959502
SCAND1_chr20_35948624_35959502	0/0	t0008	232	1	0	0	0	0	1	copy fasta	SCAND1	chr20	35948624	35959502
SCAND3_chr6_28565535_28592298	0/0	t0001	1958	283	42	54	149	10	28	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/1	t0002	1958	80	16	14	35	5	9	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	t0003	1958	38	14	4	17	1	2	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	t0004	1958	11	8	3	0	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	t0005	1958	4	4	0	0	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	t0006	1958	3	1	0	0	0	2	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	t0007	1958	3	0	0	3	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	t0008	1958	2	2	0	0	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	t0009	1958	1	0	0	0	0	1	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	t0010	1958	1	1	0	0	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	t0011	1958	1	0	0	1	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	t0012	1958	1	0	0	1	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	t0013	1958	1	0	1	0	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	t0014	1958	1	0	0	1	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	t0015	1958	1	0	0	1	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAPER_chr15_76342904_76910340	1/1	t0001	831	151	47	28	54	6	14	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	t0002	831	113	31	16	53	4	9	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	t0003	831	25	5	3	15	1	1	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	t0004	831	16	12	4	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	t0005	831	1	1	0	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	t0006	831	1	0	1	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	t0007	831	1	0	0	0	0	1	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	t0008	831	1	0	0	0	0	1	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	t0009	831	1	1	0	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340