JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCAPER_chr15_76342904_76910340	0/0	t0010	831	1	0	0	0	1	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	t0011	831	1	1	0	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAP_chr3_47408681_47480941	1/1	t0001	415	264	75	46	104	6	31	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	t0002	415	17	2	6	0	4	5	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	t0003	420	15	0	3	12	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	t0004	418	3	2	1	0	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	t0005	415	2	1	1	0	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	t0006	415	1	1	0	0	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	t0007	415	1	1	0	0	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	t0008	415	1	0	1	0	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCARA3_chr8_27628902_27678018	1/0	t0001	1967	143	39	15	70	3	15	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0002	1967	59	3	18	27	3	8	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0003	1965	54	1	24	18	2	9	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0004	1969	45	1	3	36	1	4	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0005	1965	25	18	2	5	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/1	t0006	1967	10	8	1	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0007	1965	7	0	0	7	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0008	1967	7	0	0	6	0	1	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0009	1965	5	0	0	5	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0010	1967	4	4	0	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0011	1965	4	4	0	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0012	1967	4	0	0	2	0	2	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0013	1967	4	0	0	4	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0014	1965	3	3	0	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0015	1967	3	0	0	1	1	1	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0016	1967	2	0	0	0	0	2	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0017	1967	2	0	2	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0018	1967	2	2	0	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0019	1967	2	0	0	2	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0020	1965	2	0	0	2	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0021	1965	2	0	0	2	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0022	1967	1	1	0	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0023	1967	1	1	0	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0024	1965	1	0	1	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0025	1965	1	0	0	0	0	1	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0026	1969	1	1	0	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0027	1969	1	1	0	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0028	1969	1	0	0	1	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0029	1967	1	0	0	1	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0030	1967	1	0	1	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0031	1967	1	1	0	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0032	1967	1	1	0	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0033	1967	1	0	0	0	0	1	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0034	1967	1	0	0	0	1	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0035	1965	1	0	0	0	1	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0036	1965	1	0	1	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0037	1965	1	1	0	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0038	1967	1	0	0	1	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0039	1979	1	0	1	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	t0040	1965	1	0	1	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018