JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCARA5_chr8_27864883_27997673	0/0	t0051	2483	1	0	0	0	0	1	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	t0052	2483	1	0	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	t0053	2482	1	0	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	t0054	2483	1	0	0	0	0	1	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	t0055	2483	1	0	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	t0056	2483	1	0	1	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	t0057	2483	1	1	0	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	t0058	2482	1	0	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	t0059	2483	1	0	0	1	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	t0060	2482	1	1	0	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	t0061	2482	1	0	1	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	t0062	2484	1	1	0	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	t0063	2484	1	1	0	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	t0064	2484	1	0	1	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	t0065	2483	1	1	0	0	0	0	copy fasta	SCARA5	chr8	27864883	27997673
SCARB1_chr12_124771856_124868864	0/0	t0001	1878	132	12	31	57	5	27	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0002	1878	64	0	9	54	0	1	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/1	t0003	1876	62	25	7	12	4	13	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0004	1876	20	13	1	6	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	1/0	t0005	1876	15	4	4	0	1	5	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0006	1876	12	11	1	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0007	1878	10	0	4	6	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0008	1878	9	9	0	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0009	1878	4	0	4	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0010	1878	3	0	0	3	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0011	1878	3	3	0	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0012	1876	3	3	0	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0013	1878	3	0	0	3	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0014	1876	2	2	0	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0015	1876	2	2	0	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0016	1878	2	1	1	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0017	1876	2	2	0	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0018	1878	1	0	1	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0019	1876	1	1	0	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0020	1876	1	1	0	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0021	1878	1	0	0	1	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0022	1878	1	0	1	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0023	1876	1	0	0	0	0	1	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0024	1876	1	0	0	0	0	1	copy fasta	SCARB1	chr12	124771856	124868864
SCARB1_chr12_124771856_124868864	0/0	t0025	1876	1	1	0	0	0	0	copy fasta	SCARB1	chr12	124771856	124868864
SCARB2_chr4_76153737_76218824	0/0	t0001	3258	94	7	23	52	5	7	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0002	3258	84	19	10	44	2	9	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0003	3258	62	3	8	39	1	11	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0004	3258	30	9	4	14	1	2	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/1	t0005	3258	22	1	12	0	4	4	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0006	3258	20	18	1	1	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0007	3258	15	1	2	5	2	5	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0008	3258	15	15	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0009	3258	13	4	0	9	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0010	3258	5	0	0	5	0	0	copy fasta	SCARB2	chr4	76153737	76218824