JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCARB2_chr4_76153737_76218824	0/0	t0011	3258	2	2	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0012	3258	2	2	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0013	3258	2	2	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0014	3258	2	2	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0015	3258	1	1	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0016	3258	1	1	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0017	3258	1	0	0	0	1	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0018	3258	1	0	0	1	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0019	3258	1	1	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	1/0	t0020	3258	1	0	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0021	3258	1	1	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0022	3258	1	1	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0023	3258	1	1	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0024	3258	1	1	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0025	3258	1	1	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0026	3258	1	0	0	1	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0027	3258	1	0	0	1	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0028	3258	1	1	0	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0029	3258	1	0	1	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARB2_chr4_76153737_76218824	0/0	t0030	3258	1	0	1	0	0	0	copy fasta	SCARB2	chr4	76153737	76218824
SCARF1_chr17_1628858_1650732	0/1	t0001	935	258	35	40	144	8	30	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	t0002	936	107	40	26	20	6	15	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	t0003	937	11	8	0	2	0	1	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	t0004	935	9	9	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	t0005	933	5	0	2	3	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	t0006	936	4	0	0	4	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	t0007	935	2	2	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	t0008	935	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	t0009	936	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	t0010	936	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	t0011	935	1	0	0	1	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF1_chr17_1628858_1650732	0/0	t0012	936	1	1	0	0	0	0	copy fasta	SCARF1	chr17	1628858	1650732
SCARF2_chr22_20419584_20442825	0/0	t0001	863	184	51	41	55	10	27	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	1/0	t0002	863	109	31	17	41	5	14	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/1	t0003	863	87	2	14	61	3	6	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	t0004	863	9	8	1	0	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	t0005	863	7	0	0	7	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	t0006	863	2	0	0	2	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	t0007	863	1	0	0	1	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	t0008	863	1	0	0	0	0	1	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	t0009	863	1	0	0	1	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCARF2_chr22_20419584_20442825	0/0	t0010	863	1	0	1	0	0	0	copy fasta	SCARF2	chr22	20419584	20442825
SCART1_chr10_133448945_133474760	0/1	t0001	1846	209	28	52	87	11	30	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	t0002	1846	94	20	12	54	0	8	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	t0003	1846	79	13	10	46	1	9	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	t0004	1846	15	12	3	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	t0005	1844	8	7	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	t0006	1846	8	8	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	t0007	1846	4	4	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	t0008	1846	3	2	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760