JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCART1_chr10_133448945_133474760	0/0	t0009	1846	2	2	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	t0010	1846	2	0	0	2	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	t0011	1846	2	2	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	t0012	1846	1	0	0	0	1	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	t0013	1846	1	0	0	1	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	1/0	t0014	1846	1	0	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	t0015	1846	1	0	0	0	0	1	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	t0016	1846	1	0	0	0	1	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	t0017	1846	1	0	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	t0018	1846	1	0	0	1	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	t0019	1846	1	0	0	1	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCCPDH_chr1_246719409_246773137	1/1	t0001	852	147	36	25	64	6	14	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	t0002	852	93	7	22	42	3	19	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	t0003	852	73	6	13	43	6	5	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	t0004	852	48	8	4	34	0	2	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	t0005	852	11	10	1	0	0	0	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	t0006	852	9	5	4	0	0	0	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	t0007	852	8	8	0	0	0	0	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	t0008	852	7	7	0	0	0	0	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	t0009	852	5	5	0	0	0	0	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	t0010	852	4	0	0	4	0	0	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	t0011	852	1	0	1	0	0	0	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	t0012	852	1	0	0	0	1	0	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	t0013	852	1	1	0	0	0	0	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	t0014	852	1	0	0	1	0	0	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	t0015	852	1	1	0	0	0	0	copy fasta	SCCPDH	chr1	246719409	246773137
SCD5_chr4_82624539_82803796	0/0	t0001	2048	87	13	19	38	2	15	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/1	t0002	2048	51	13	8	25	2	2	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0003	2047	9	8	0	1	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0004	2049	8	4	1	0	0	3	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0005	2046	7	7	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0006	2048	5	5	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	1/0	t0007	2048	4	0	1	0	2	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0008	2048	4	4	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0009	2047	3	3	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0010	2048	3	3	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0011	2048	2	2	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0012	2050	2	2	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0013	2050	2	0	1	0	0	1	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0014	2049	2	0	0	1	0	1	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0015	2048	2	1	0	0	0	1	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0016	2049	2	2	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0017	2046	1	1	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0018	2047	1	1	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0019	2049	1	1	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0020	2051	1	0	0	0	0	1	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0021	2048	1	1	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0022	2046	1	1	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0023	2048	1	1	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0024	2048	1	0	0	1	0	0	copy fasta	SCD5	chr4	82624539	82803796