JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCD5_chr4_82624539_82803796	0/0	t0025	2048	1	0	0	0	0	1	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0026	2048	1	0	0	0	0	1	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0027	2046	1	1	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0028	2048	1	0	1	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0029	2046	1	0	1	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0030	2047	1	1	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0031	2048	1	1	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0032	2048	1	1	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	t0033	2047	1	1	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD_chr10_100342233_100369826	1/1	t0001	4166	117	24	26	48	2	15	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0002	4166	69	1	13	49	3	3	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0003	4165	34	2	0	27	0	5	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0004	4167	24	1	2	9	2	10	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0005	4166	15	2	2	8	2	1	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0006	4167	15	1	1	13	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0007	4167	14	3	2	5	1	3	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0008	4166	12	0	5	0	1	6	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0009	4166	12	4	4	1	2	1	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0010	4167	11	11	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0011	4166	7	0	0	7	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0012	4165	5	5	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0013	4166	5	5	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0014	4166	5	5	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0015	4167	5	0	0	5	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0016	4167	4	4	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0017	4166	4	0	0	4	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0018	4166	4	0	1	0	0	3	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0019	4166	3	0	3	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0020	4165	3	3	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0021	4168	3	0	0	3	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0022	4166	3	0	2	0	1	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0023	4165	3	3	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0024	4166	2	2	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0025	4167	2	2	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0026	4167	2	2	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0027	4168	2	0	0	1	0	1	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0028	4166	2	0	0	2	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0029	4166	2	2	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0030	4166	2	0	0	2	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0031	4168	2	0	0	2	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0032	4168	1	1	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0033	4166	1	1	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0034	4168	1	1	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0035	4168	1	1	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0036	4166	1	1	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0037	4166	1	0	0	1	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0038	4166	1	0	0	1	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0039	4166	1	1	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0040	4165	1	0	0	1	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0041	4166	1	0	1	0	0	0	copy fasta	SCD	chr10	100342233	100369826