JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCD_chr10_100342233_100369826	0/0	t0042	4166	1	1	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0043	4167	1	0	1	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0044	4167	1	0	0	1	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0045	4165	1	1	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0046	4167	1	0	0	0	0	1	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0047	4167	1	0	0	1	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0048	4166	1	1	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0049	4166	1	0	0	1	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0050	4167	1	0	0	1	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0051	4167	1	1	0	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0052	4166	1	0	0	1	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0053	4167	1	0	0	0	0	1	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0054	4167	1	0	0	1	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0055	4165	1	0	0	1	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0056	4155	1	0	1	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0057	4165	1	0	1	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	t0058	4155	1	0	1	0	0	0	copy fasta	SCD	chr10	100342233	100369826
SCEL_chr13_77530706_77650263	0/0	t0001	1124	197	36	29	117	3	12	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	1/1	t0002	1128	152	45	35	45	9	16	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	t0003	1124	3	0	0	3	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	t0004	1124	1	0	0	1	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	t0005	1124	1	1	0	0	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	t0006	1124	1	0	0	1	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	t0007	1124	1	0	0	1	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCFD1_chr14_30617319_30740850	1/1	t0001	262	323	83	56	144	8	30	copy fasta	SCFD1	chr14	30617319	30740850
SCFD1_chr14_30617319_30740850	0/0	t0002	262	5	5	0	0	0	0	copy fasta	SCFD1	chr14	30617319	30740850
SCFD2_chr4_52867982_53371061	0/0	t0001	1108	75	31	19	17	2	6	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	t0002	1108	27	13	1	7	1	5	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	t0003	1108	23	9	3	10	0	1	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	t0004	1108	8	4	1	1	2	0	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	t0005	1108	7	0	2	4	1	0	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	t0006	1108	5	0	1	3	0	1	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	t0007	1108	5	0	0	2	0	3	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	t0008	1107	4	2	1	0	0	1	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	t0009	1108	3	0	0	3	0	0	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	t0010	1108	1	1	0	0	0	0	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	t0011	1108	1	0	0	1	0	0	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	t0012	1107	1	0	0	0	0	1	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	t0013	1107	1	1	0	0	0	0	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	t0014	1107	1	1	0	0	0	0	copy fasta	SCFD2	chr4	52867982	53371061
SCG2_chr2_223591940_223607361	1/1	t0001	581	359	65	71	169	13	39	copy fasta	SCG2	chr2	223591940	223607361
SCG2_chr2_223591940_223607361	0/0	t0002	581	18	10	1	7	0	0	copy fasta	SCG2	chr2	223591940	223607361
SCG2_chr2_223591940_223607361	0/0	t0003	581	12	11	1	0	0	0	copy fasta	SCG2	chr2	223591940	223607361
SCG2_chr2_223591940_223607361	0/0	t0004	581	2	0	0	2	0	0	copy fasta	SCG2	chr2	223591940	223607361
SCG2_chr2_223591940_223607361	0/0	t0005	581	1	0	0	0	1	0	copy fasta	SCG2	chr2	223591940	223607361
SCG2_chr2_223591940_223607361	0/0	t0006	581	1	0	1	0	0	0	copy fasta	SCG2	chr2	223591940	223607361
SCG2_chr2_223591940_223607361	0/0	t0007	581	1	0	0	0	0	1	copy fasta	SCG2	chr2	223591940	223607361
SCG3_chr15_51676503_51726026	0/1	t0001	1754	128	22	33	53	8	11	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	1/0	t0002	1754	109	17	10	68	0	13	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	t0003	1754	79	32	29	0	3	15	copy fasta	SCG3	chr15	51676503	51726026