JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCG3_chr15_51676503_51726026	0/0	t0004	1754	25	2	1	21	0	1	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	t0005	1754	17	5	0	10	1	1	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	t0006	1754	17	0	0	16	0	1	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	t0007	1754	7	7	0	0	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	t0008	1754	5	3	2	0	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	t0009	1754	4	0	0	4	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	t0010	1754	3	3	0	0	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	t0011	1754	2	0	2	0	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	t0012	1754	2	2	0	0	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	t0013	1754	1	0	0	1	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	t0014	1754	1	0	1	0	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	t0015	1754	1	0	0	1	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	t0016	1754	1	1	0	0	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG5_chr15_32636710_32702092	0/1	t0001	560	372	75	65	182	15	34	copy fasta	SCG5	chr15	32636710	32702092
SCG5_chr15_32636710_32702092	0/0	t0002	560	22	5	7	0	1	9	copy fasta	SCG5	chr15	32636710	32702092
SCG5_chr15_32636710_32702092	0/0	t0003	560	8	8	0	0	0	0	copy fasta	SCG5	chr15	32636710	32702092
SCG5_chr15_32636710_32702092	0/0	t0004	560	4	4	0	0	0	0	copy fasta	SCG5	chr15	32636710	32702092
SCG5_chr15_32636710_32702092	0/0	t0005	560	3	2	1	0	0	0	copy fasta	SCG5	chr15	32636710	32702092
SCG5_chr15_32636710_32702092	0/0	t0006	560	3	0	0	0	0	3	copy fasta	SCG5	chr15	32636710	32702092
SCG5_chr15_32636710_32702092	0/0	t0007	560	2	1	1	0	0	0	copy fasta	SCG5	chr15	32636710	32702092
SCG5_chr15_32636710_32702092	0/0	t0008	560	1	1	0	0	0	0	copy fasta	SCG5	chr15	32636710	32702092
SCGB1A1_chr11_62414033_62428195	1/1	t0001	168	297	75	59	127	13	21	copy fasta	SCGB1A1	chr11	62414033	62428195
SCGB1A1_chr11_62414033_62428195	0/0	t0002	168	147	18	21	80	5	23	copy fasta	SCGB1A1	chr11	62414033	62428195
SCGB1A1_chr11_62414033_62428195	0/0	t0003	168	2	2	0	0	0	0	copy fasta	SCGB1A1	chr11	62414033	62428195
SCGB1A1_chr11_62414033_62428195	0/0	t0004	168	1	1	0	0	0	0	copy fasta	SCGB1A1	chr11	62414033	62428195
SCGB1A1_chr11_62414033_62428195	0/0	t0005	168	1	0	0	1	0	0	copy fasta	SCGB1A1	chr11	62414033	62428195
SCGB1C1_chr11_188078_199575	0/0	t0001	148	239	66	47	94	9	23	copy fasta	SCGB1C1	chr11	188078	199575
SCGB1C1_chr11_188078_199575	0/0	t0002	148	115	24	21	48	9	13	copy fasta	SCGB1C1	chr11	188078	199575
SCGB1C2_chr17_132569_144067	0/0	t0001	148	208	70	38	71	11	18	copy fasta	SCGB1C2	chr17	132569	144067
SCGB1C2_chr17_132569_144067	0/0	t0002	148	192	21	36	104	5	26	copy fasta	SCGB1C2	chr17	132569	144067
SCGB1C2_chr17_132569_144067	0/0	t0003	148	1	0	0	1	0	0	copy fasta	SCGB1C2	chr17	132569	144067
SCGB1C2_chr17_132569_144067	0/0	t0004	148	1	1	0	0	0	0	copy fasta	SCGB1C2	chr17	132569	144067
SCGB1D1_chr11_62185216_62198539	1/0	t0001	181	418	91	74	194	18	40	copy fasta	SCGB1D1	chr11	62185216	62198539
SCGB1D1_chr11_62185216_62198539	0/0	t0002	181	4	4	0	0	0	0	copy fasta	SCGB1D1	chr11	62185216	62198539
SCGB1D1_chr11_62185216_62198539	0/1	t0003	181	1	0	0	0	0	0	copy fasta	SCGB1D1	chr11	62185216	62198539
SCGB1D1_chr11_62185216_62198539	0/0	t0004	181	1	1	0	0	0	0	copy fasta	SCGB1D1	chr11	62185216	62198539
SCGB1D2_chr11_62237239_62249812	1/1	t0001	183	420	83	83	196	18	38	copy fasta	SCGB1D2	chr11	62237239	62249812
SCGB1D2_chr11_62237239_62249812	0/0	t0002	183	15	12	1	2	0	0	copy fasta	SCGB1D2	chr11	62237239	62249812
SCGB1D2_chr11_62237239_62249812	0/0	t0003	183	1	1	0	0	0	0	copy fasta	SCGB1D2	chr11	62237239	62249812
SCGB1D4_chr11_62291281_62304075	1/1	t0001	195	421	95	68	198	16	42	copy fasta	SCGB1D4	chr11	62291281	62304075
SCGB1D4_chr11_62291281_62304075	0/0	t0002	195	9	3	4	0	2	0	copy fasta	SCGB1D4	chr11	62291281	62304075
SCGB2A1_chr11_62203673_62218943	1/1	t0001	233	420	87	79	190	18	44	copy fasta	SCGB2A1	chr11	62203673	62218943
SCGB2A1_chr11_62203673_62218943	0/0	t0002	233	11	0	0	11	0	0	copy fasta	SCGB2A1	chr11	62203673	62218943
SCGB2A1_chr11_62203673_62218943	0/0	t0003	233	9	9	0	0	0	0	copy fasta	SCGB2A1	chr11	62203673	62218943
SCGB2A1_chr11_62203673_62218943	0/0	t0004	233	1	0	0	1	0	0	copy fasta	SCGB2A1	chr11	62203673	62218943
SCGB2A1_chr11_62203673_62218943	0/0	t0005	233	1	0	1	0	0	0	copy fasta	SCGB2A1	chr11	62203673	62218943
SCGB2A2_chr11_62265158_62278160	1/1	t0001	225	380	90	75	162	16	35	copy fasta	SCGB2A2	chr11	62265158	62278160
SCGB2A2_chr11_62265158_62278160	0/0	t0002	225	9	2	5	0	2	0	copy fasta	SCGB2A2	chr11	62265158	62278160
SCGB2A2_chr11_62265158_62278160	0/0	t0003	220	1	0	0	0	0	1	copy fasta	SCGB2A2	chr11	62265158	62278160
SCGB2B2_chr19_34585644_34682159	0/0	t0001	6465	37	0	4	27	1	5	copy fasta	SCGB2B2	chr19	34585644	34682159