JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCGB2B2_chr19_34585644_34682159	0/0	t0002	6469	28	0	8	19	1	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0003	6458	22	1	5	15	1	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0004	6457	14	13	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0005	6459	13	0	0	13	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0006	6469	10	0	2	3	2	3	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0007	6465	10	0	1	9	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0008	6474	8	1	4	1	1	1	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0009	6473	8	4	1	3	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0010	6467	6	0	3	3	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0011	6475	6	4	0	0	0	2	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0012	6469	6	4	0	1	0	1	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0013	6449	6	0	0	6	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0014	6458	6	0	0	6	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/1	t0015	6471	5	4	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0016	6449	5	1	0	0	0	4	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	1/0	t0017	6473	5	3	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0018	6459	5	0	1	4	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0019	6469	4	0	1	2	0	1	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0020	6478	4	0	0	3	0	1	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0021	6459	4	0	2	2	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0022	6473	4	0	0	4	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0023	6460	4	3	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0024	6469	4	0	0	0	0	4	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0025	6471	3	0	0	2	0	1	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0026	6463	3	1	2	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0027	6477	3	0	0	3	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0028	6473	3	0	0	3	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0029	6471	3	0	1	2	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0030	6465	3	0	1	2	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0031	6472	3	0	0	3	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0032	6467	3	3	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0033	6475	3	3	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0034	6473	2	0	0	2	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0035	6475	2	0	0	1	1	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0036	6463	2	2	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0037	6467	2	0	0	1	0	1	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0038	6475	2	0	1	0	0	1	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0039	6467	2	0	1	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0040	6455	2	2	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0041	6464	2	0	0	2	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0042	6458	2	1	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0043	6464	2	0	0	2	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0044	6460	2	0	0	2	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0045	6465	2	0	0	2	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0046	6472	2	2	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0047	6454	2	1	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0048	6477	2	0	0	2	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0049	6463	2	0	0	2	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0050	6473	2	0	1	0	0	1	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0051	6456	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159