Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BAHCC1_chr17_81390457_81471331	0/0	t0031	2900	1	0	1	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0032	2900	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0033	2900	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0034	2900	1	0	0	0	0	1	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0035	2900	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0036	2900	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0037	2900	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	t0038	2900	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHD1_chr15_40435953_40473236	1/0	t0001	2437	216	9	48	117	13	28	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	t0002	2437	39	35	3	0	0	1	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	t0003	2437	36	1	11	11	1	12	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	t0004	2437	30	29	1	0	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/1	t0005	2437	17	3	2	9	0	2	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	t0006	2437	8	8	0	0	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	t0007	2437	6	5	1	0	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	t0008	2437	3	0	0	3	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	t0009	2437	3	0	0	3	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	t0010	2437	2	0	0	2	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	t0011	2437	2	0	2	0	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	t0012	2437	2	0	0	2	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	t0013	2437	1	1	0	0	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	t0014	2437	1	1	0	0	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	t0015	2437	1	0	0	1	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	t0016	2437	1	1	0	0	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	t0017	2437	1	0	0	0	0	1	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	t0018	2437	1	1	0	0	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	t0019	2437	1	0	0	0	0	1	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	t0020	2437	1	0	0	0	0	1	copy fasta	BAHD1	chr15	40435953	40473236
BAIAP2L1_chr7_98286650_98406090	0/0	t0001	2110	93	17	15	48	3	10	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	1/0	t0002	2110	71	23	6	28	1	12	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/1	t0003	2110	63	12	12	28	5	5	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	t0004	2109	36	23	3	5	1	4	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	t0005	2110	6	6	0	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	t0006	2110	6	0	4	2	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	t0007	2110	3	3	0	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	t0008	2110	3	0	0	3	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	t0009	2110	2	2	0	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	t0010	2110	2	0	0	0	0	2	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	t0011	2110	2	0	0	2	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	t0012	2110	2	2	0	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	t0013	2110	1	0	0	0	0	1	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	t0014	2110	1	1	0	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	t0015	2110	1	0	0	1	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	t0016	2110	1	0	0	1	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	t0017	2109	1	0	0	1	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	t0018	2110	1	0	1	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	t0019	2110	1	0	1	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	t0020	2110	1	0	0	1	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	t0021	2110	1	1	0	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L2_chr22_38079900_38115684	1/1	t0001	560	11	1	4	2	0	2	copy fasta	BAIAP2L2	chr22	38079900	38115684