JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCGB2B2_chr19_34585644_34682159	0/0	t0052	6459	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0053	6465	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0054	6465	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0055	6477	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0056	6465	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0057	6483	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0058	6476	1	0	0	0	1	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0059	6474	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0060	6473	1	0	0	0	1	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0061	6471	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0062	6473	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0063	6467	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0064	6461	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0065	6465	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0066	6463	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0067	6475	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0068	6469	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0069	6465	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0070	6459	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0071	6461	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0072	6480	1	0	0	0	0	1	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0073	6479	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0074	6479	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0075	6476	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0076	6475	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0077	6472	1	0	0	0	0	1	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0078	6468	1	0	0	0	0	1	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0079	6467	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0080	6447	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0081	6459	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0082	6465	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0083	6479	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0084	6475	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0085	6459	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0086	6465	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0087	6463	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0088	6463	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0089	6473	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0090	6469	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0091	6469	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0092	6469	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0093	6465	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0094	6471	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0095	6471	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0096	6469	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0097	6463	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0098	6461	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0099	6463	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0100	6465	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0101	6456	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159