JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCGB2B2_chr19_34585644_34682159	0/0	t0102	6458	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0103	6468	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0104	6464	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0105	6458	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0106	6474	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0107	6474	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0108	6458	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0109	6456	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0110	6473	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0111	6464	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0112	6461	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0113	6475	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0114	6461	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0115	6472	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0116	6470	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0117	6462	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0118	6456	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0119	6460	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0120	6468	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0121	6469	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0122	6469	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0123	6469	1	0	0	0	0	1	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0124	6459	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0125	6451	1	0	0	0	0	1	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0126	6475	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0127	6467	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0128	6463	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0129	6476	1	0	0	0	0	1	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0130	6474	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0131	6471	1	0	0	0	1	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0132	6446	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0133	6458	1	0	0	1	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0134	6465	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	t0135	6465	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB3A1_chr5_180585105_180596499	1/1	t0001	164	468	98	80	224	16	48	copy fasta	SCGB3A1	chr5	180585105	180596499
SCGB3A1_chr5_180585105_180596499	0/0	t0002	164	1	0	0	1	0	0	copy fasta	SCGB3A1	chr5	180585105	180596499
SCGB3A1_chr5_180585105_180596499	0/0	t0003	164	1	0	0	1	0	0	copy fasta	SCGB3A1	chr5	180585105	180596499
SCGB3A2_chr5_147873711_147887191	1/1	t0001	235	420	96	74	188	16	44	copy fasta	SCGB3A2	chr5	147873711	147887191
SCGB3A2_chr5_147873711_147887191	0/0	t0002	235	1	0	0	1	0	0	copy fasta	SCGB3A2	chr5	147873711	147887191
SCGB3A2_chr5_147873711_147887191	0/0	t0003	235	1	1	0	0	0	0	copy fasta	SCGB3A2	chr5	147873711	147887191
SCGB3A2_chr5_147873711_147887191	0/0	t0004	235	1	1	0	0	0	0	copy fasta	SCGB3A2	chr5	147873711	147887191
SCGB3A2_chr5_147873711_147887191	0/0	t0005	235	1	0	0	1	0	0	copy fasta	SCGB3A2	chr5	147873711	147887191
SCGN_chr6_25647215_25706783	0/0	t0001	639	112	9	21	73	5	4	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/1	t0002	639	82	24	10	23	6	18	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	t0003	639	65	36	13	4	4	8	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	t0004	638	41	0	13	23	1	4	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	t0005	638	26	2	4	14	1	5	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	t0006	638	18	3	1	10	1	3	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	t0007	637	6	6	0	0	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	t0008	639	6	3	3	0	0	0	copy fasta	SCGN	chr6	25647215	25706783