JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCLY_chr2_238056001_238104413	0/0	t0029	1225	3	3	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0030	1180	3	2	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0031	1111	3	2	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0032	1222	3	3	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0033	1307	3	3	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0034	1278	3	0	1	0	2	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0035	1138	2	0	0	2	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0036	1180	2	0	0	2	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0037	1281	2	0	0	0	0	2	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0038	1251	2	2	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0039	1211	2	0	0	2	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0040	1071	2	2	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0041	1127	2	0	1	0	1	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0042	1155	2	0	0	2	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0043	1127	2	0	2	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0044	1239	2	0	0	1	1	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0045	1127	2	0	0	0	1	1	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	1/1	t0046	1113	2	0	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0047	1169	2	0	0	2	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0048	1169	2	0	2	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0049	1169	2	0	0	2	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0050	1253	2	0	0	2	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0051	1169	2	0	2	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0052	1239	2	0	0	2	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0053	1225	2	2	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0054	1337	2	0	2	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0055	1211	2	0	0	2	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0056	1180	2	0	2	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0057	1278	2	0	0	0	0	2	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0058	1110	2	2	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0059	1225	2	2	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0060	1180	2	0	1	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0061	1222	2	2	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0062	1183	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0063	1194	1	0	0	0	0	1	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0064	1096	1	0	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0065	1180	1	0	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0066	1208	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0067	1096	1	0	0	0	0	1	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0068	1166	1	0	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0069	1180	1	0	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0070	1180	1	0	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0071	1180	1	0	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0072	1096	1	0	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0073	1082	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0074	1096	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0075	1096	1	0	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0076	1152	1	0	0	0	1	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0077	1068	1	0	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0078	1236	1	0	0	0	0	1	copy fasta	SCLY	chr2	238056001	238104413