Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BAIAP2L2_chr22_38079900_38115684	0/0	t0002	560	4	0	1	0	2	1	copy fasta	BAIAP2L2	chr22	38079900	38115684
BAIAP2L2_chr22_38079900_38115684	0/0	t0003	560	2	0	1	0	0	1	copy fasta	BAIAP2L2	chr22	38079900	38115684
BAIAP2L2_chr22_38079900_38115684	0/0	t0004	589	1	1	0	0	0	0	copy fasta	BAIAP2L2	chr22	38079900	38115684
BAIAP2_chr17_81030151_81122434	0/1	t0001	1700	107	10	21	52	5	18	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	1/0	t0002	1700	72	9	26	27	1	8	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0003	1706	62	14	11	28	3	6	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0004	1700	48	6	10	21	0	11	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0005	1705	18	12	2	1	2	1	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0006	1705	6	5	0	0	0	1	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0007	1700	4	2	1	1	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0008	1706	3	0	0	3	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0009	1700	3	0	0	3	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0010	1705	3	2	1	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0011	1700	3	2	1	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0012	1700	3	3	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0013	1706	2	2	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0014	1700	2	2	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0015	1700	2	2	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0016	1696	2	1	0	0	0	1	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0017	1705	2	2	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0018	1706	2	1	1	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0019	1700	2	2	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0020	1706	1	0	0	1	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0021	1700	1	0	0	1	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0022	1700	1	1	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0023	1700	1	1	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0024	1700	1	1	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0025	1700	1	1	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0026	1700	1	0	0	1	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0027	1700	1	0	1	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0028	1696	1	1	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0029	1700	1	0	1	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0030	1712	1	1	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0031	1706	1	0	0	1	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0032	1700	1	0	0	1	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0033	1700	1	1	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0034	1700	1	1	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0035	1700	1	0	1	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0036	1705	1	0	1	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0037	1700	1	0	1	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0038	1700	1	0	0	1	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0039	1700	1	1	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0040	1706	1	1	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0041	1700	1	0	0	0	1	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0042	1700	1	0	0	1	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0043	1700	1	0	1	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0044	1700	1	0	0	1	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0045	1705	1	1	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0046	1700	1	1	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0047	1700	1	1	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434