JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCLY_chr2_238056001_238104413	0/0	t0079	1127	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0080	1169	1	1	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0081	1183	1	1	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0082	1236	1	1	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0083	1281	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0084	1197	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0085	1211	1	0	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0086	1197	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0087	1335	1	0	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0088	1211	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0089	1250	1	1	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0090	1208	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0091	1127	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0092	1267	1	0	0	0	0	1	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0093	1113	1	0	0	0	0	1	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0094	1197	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0095	1085	1	1	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0096	1250	1	1	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0097	1180	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0098	1180	1	0	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0099	1225	1	1	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0100	1141	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0101	1183	1	0	0	0	0	1	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0102	1155	1	0	0	0	0	1	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0103	1155	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0104	1183	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0105	1082	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0106	1183	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0107	1138	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0108	1141	1	1	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0109	1183	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0110	1435	1	1	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0111	1169	1	0	0	0	1	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0112	1169	1	1	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0113	1141	1	1	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0114	1099	1	0	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0115	1169	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0116	1110	1	0	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0117	1110	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0118	1110	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0119	1211	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0120	1155	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0121	1155	1	0	0	0	0	1	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0122	1103	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0123	1040	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0124	1211	1	0	0	0	0	1	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0125	1099	1	0	0	0	1	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0126	1211	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0127	1211	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0128	1351	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413