JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCLY_chr2_238056001_238104413	0/0	t0179	1306	1	1	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0180	1110	1	0	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0181	1124	1	1	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCMH1_chr1_41022202_41247306	0/1	t0001	1358	140	33	21	60	5	20	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	t0002	1359	43	0	10	25	3	5	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	t0003	1358	31	1	13	13	2	2	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	t0004	1358	27	0	10	17	0	0	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	t0005	1358	27	1	2	18	3	3	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	t0006	1358	23	7	0	13	0	3	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	t0007	1358	4	3	1	0	0	0	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	t0008	1359	3	0	0	0	0	3	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	1/0	t0009	1358	1	0	0	0	0	0	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	t0010	1359	1	0	0	1	0	0	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	t0011	1359	1	0	0	1	0	0	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	t0012	1358	1	0	1	0	0	0	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	t0013	1358	1	0	0	0	1	0	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	t0014	1358	1	1	0	0	0	0	copy fasta	SCMH1	chr1	41022202	41247306
SCML1_chrX_17732493_17759985	1/1	t0001	1898	208	55	33	89	4	25	copy fasta	SCML1	chrX	17732493	17759985
SCML1_chrX_17732493_17759985	0/0	t0002	1898	42	1	5	35	0	1	copy fasta	SCML1	chrX	17732493	17759985
SCML1_chrX_17732493_17759985	0/0	t0003	1898	14	10	3	0	1	0	copy fasta	SCML1	chrX	17732493	17759985
SCML1_chrX_17732493_17759985	0/0	t0004	1899	5	0	3	0	2	0	copy fasta	SCML1	chrX	17732493	17759985
SCML1_chrX_17732493_17759985	0/0	t0005	1899	3	2	0	1	0	0	copy fasta	SCML1	chrX	17732493	17759985
SCML1_chrX_17732493_17759985	0/0	t0006	1899	3	0	0	3	0	0	copy fasta	SCML1	chrX	17732493	17759985
SCML1_chrX_17732493_17759985	0/0	t0007	1898	2	2	0	0	0	0	copy fasta	SCML1	chrX	17732493	17759985
SCML1_chrX_17732493_17759985	0/0	t0008	1898	1	0	0	1	0	0	copy fasta	SCML1	chrX	17732493	17759985
SCML1_chrX_17732493_17759985	0/0	t0009	1897	1	0	1	0	0	0	copy fasta	SCML1	chrX	17732493	17759985
SCML1_chrX_17732493_17759985	0/0	t0010	1897	1	0	1	0	0	0	copy fasta	SCML1	chrX	17732493	17759985
SCML1_chrX_17732493_17759985	0/0	t0011	1897	1	0	0	1	0	0	copy fasta	SCML1	chrX	17732493	17759985
SCML2_chrX_18234313_18359688	1/1	t0001	2060	243	60	44	108	9	20	copy fasta	SCML2	chrX	18234313	18359688
SCML2_chrX_18234313_18359688	0/0	t0002	2060	2	2	0	0	0	0	copy fasta	SCML2	chrX	18234313	18359688
SCML2_chrX_18234313_18359688	0/0	t0003	2060	1	1	0	0	0	0	copy fasta	SCML2	chrX	18234313	18359688
SCML2_chrX_18234313_18359688	0/0	t0004	2060	1	1	0	0	0	0	copy fasta	SCML2	chrX	18234313	18359688
SCML4_chr6_107697154_107829313	0/0	t0001	3294	34	23	3	6	0	2	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0002	3294	29	1	12	10	1	5	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0003	3294	21	3	5	10	1	2	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/1	t0004	3294	20	2	3	9	2	3	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0005	3294	20	0	3	12	0	5	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0006	3294	20	10	2	6	0	2	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	1/0	t0007	3294	18	8	5	4	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0008	3294	14	4	3	5	1	1	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0009	3294	14	2	6	3	1	2	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0010	3293	8	6	0	2	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0011	3294	8	0	0	8	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0012	3293	8	8	0	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0013	3294	7	7	0	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0014	3293	5	5	0	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0015	3293	4	4	0	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0016	3294	3	0	0	3	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0017	3294	2	0	0	2	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0018	3294	2	0	0	2	0	0	copy fasta	SCML4	chr6	107697154	107829313