JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCML4_chr6_107697154_107829313	0/0	t0019	3294	2	2	0	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0020	3294	1	0	0	0	0	1	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0021	3294	1	1	0	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0022	3294	1	0	1	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0023	3294	1	0	0	1	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0024	3294	1	0	0	0	0	1	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0025	3294	1	1	0	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0026	3294	1	1	0	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0027	3294	1	1	0	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0028	3294	1	0	1	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0029	3294	1	1	0	0	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCML4_chr6_107697154_107829313	0/0	t0030	3294	1	0	0	1	0	0	copy fasta	SCML4	chr6	107697154	107829313
SCN10A_chr3_38691807_38821217	1/0	t0001	756	243	50	35	121	11	25	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/1	t0002	756	121	38	32	32	3	15	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	t0003	756	3	2	1	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	t0004	756	2	2	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	t0005	756	1	1	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	t0006	756	1	0	0	1	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN10A_chr3_38691807_38821217	0/0	t0007	756	1	1	0	0	0	0	copy fasta	SCN10A	chr3	38691807	38821217
SCN11A_chr3_38840764_39056944	0/0	t0001	1416	146	32	28	66	7	13	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	1/1	t0002	1418	80	6	13	46	5	8	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	t0003	1416	35	28	4	0	2	1	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	t0004	1416	17	2	2	11	0	2	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	t0005	1418	7	7	0	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	t0006	1418	6	2	0	3	0	1	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	t0007	1416	4	3	1	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	t0008	1416	3	3	0	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	t0009	1416	2	0	0	2	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	t0010	1418	2	2	0	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	t0011	1416	2	2	0	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	t0012	1416	2	0	0	2	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	t0013	1418	1	0	0	1	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	t0014	1418	1	1	0	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	t0015	1416	1	1	0	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	t0016	1416	1	0	0	1	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	t0017	1418	1	0	0	1	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	t0018	1418	1	0	0	1	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	t0019	1418	1	0	0	0	0	1	copy fasta	SCN11A	chr3	38840764	39056944
SCN11A_chr3_38840764_39056944	0/0	t0020	1416	1	1	0	0	0	0	copy fasta	SCN11A	chr3	38840764	39056944
SCN1A_chr2_165980813_166133020	0/1	t0001	5902	46	5	12	20	2	6	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0002	5908	45	3	5	31	1	5	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0003	5899	31	2	9	15	1	4	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0004	5908	17	0	11	6	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0005	5897	15	0	0	15	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0006	5905	11	11	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0007	5908	11	0	1	7	0	3	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0008	5897	9	0	6	3	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0009	5905	7	0	0	7	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0010	5908	7	1	3	0	2	1	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0011	5910	7	0	0	7	0	0	copy fasta	SCN1A	chr2	165980813	166133020