JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCN1A_chr2_165980813_166133020	0/0	t0012	5902	6	1	0	3	0	2	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0013	5900	6	1	0	5	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0014	5906	6	6	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0015	5906	6	5	1	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0016	5898	5	0	0	5	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0017	5904	4	1	0	3	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0018	5910	4	0	2	0	0	2	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0019	5904	4	2	1	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0020	5916	4	4	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0021	5905	3	3	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0022	5901	3	0	0	2	0	1	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0023	5903	3	0	0	2	0	1	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0024	5913	3	3	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0025	5912	3	0	0	3	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0026	5907	3	2	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0027	5910	3	0	1	2	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0028	5903	2	0	1	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0029	5908	2	0	0	0	1	1	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0030	5906	2	1	1	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0031	5894	2	2	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0032	5918	2	1	1	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0033	5914	2	2	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0034	5916	2	1	1	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0035	5904	2	2	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0036	5908	2	2	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0037	5912	2	2	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0038	5907	2	1	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0039	5909	2	0	0	2	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0040	5906	2	0	0	1	0	1	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0041	5900	2	2	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0042	5903	2	2	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0043	5912	2	0	0	2	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0044	5908	2	1	1	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0045	5917	2	2	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0046	5902	2	0	0	2	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0047	5904	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0048	5904	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0049	5899	1	0	0	0	1	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0050	5902	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0051	5906	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0052	5901	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0053	5901	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0054	5904	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0055	5916	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	1/0	t0056	5911	1	0	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0057	5903	1	0	1	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0058	5901	1	0	1	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0059	5898	1	0	1	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0060	5899	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0061	5905	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020