JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCN1A_chr2_165980813_166133020	0/0	t0062	5906	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0063	5906	1	0	1	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0064	5903	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0065	5901	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0066	5902	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0067	5902	1	0	1	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0068	5914	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0069	5912	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0070	5910	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0071	5908	1	0	0	0	0	1	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0072	5905	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0073	5904	1	0	1	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0074	5909	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0075	5907	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0076	5906	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0077	5908	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0078	5914	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0079	5909	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0080	5908	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0081	5894	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0082	5908	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0083	5918	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0084	5912	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0085	5910	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0086	5892	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0087	5918	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0088	5918	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0089	5907	1	1	0	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0090	5908	1	0	1	0	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0091	5910	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1A_chr2_165980813_166133020	0/0	t0092	5899	1	0	0	1	0	0	copy fasta	SCN1A	chr2	165980813	166133020
SCN1B_chr19_35025470_35045449	1/1	t0001	1010	307	68	68	131	11	27	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	t0002	1010	46	5	4	26	2	9	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	t0003	1010	7	0	5	0	2	0	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	t0004	1011	6	1	1	3	0	1	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	t0005	1011	6	0	1	2	1	2	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	t0006	1010	6	6	0	0	0	0	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	t0007	1010	4	0	0	4	0	0	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	t0008	1010	3	2	1	0	0	0	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	t0009	1011	3	0	0	2	0	1	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	t0010	1009	3	3	0	0	0	0	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	t0011	1010	2	0	0	0	0	2	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	t0012	1011	2	0	0	2	0	0	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	t0013	1012	1	0	0	1	0	0	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	t0014	1010	1	0	0	1	0	0	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	t0015	1010	1	0	0	1	0	0	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	t0016	1010	1	0	0	0	0	1	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	t0017	1010	1	1	0	0	0	0	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	t0018	1010	1	0	0	0	0	1	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	t0019	1010	1	0	0	1	0	0	copy fasta	SCN1B	chr19	35025470	35045449