JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCN1B_chr19_35025470_35045449	0/0	t0020	1010	1	1	0	0	0	0	copy fasta	SCN1B	chr19	35025470	35045449
SCN1B_chr19_35025470_35045449	0/0	t0021	1010	1	1	0	0	0	0	copy fasta	SCN1B	chr19	35025470	35045449
SCN2A_chr2_165234414_165397304	1/0	t0001	2759	188	29	37	85	7	29	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/1	t0002	2759	131	17	34	64	5	10	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	t0003	2759	12	12	0	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	t0004	2758	5	5	0	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	t0005	2759	4	1	2	0	0	1	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	t0006	2759	3	3	0	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	t0007	2759	2	2	0	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	t0008	2759	2	2	0	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	t0009	2759	2	0	0	2	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	t0010	2759	2	0	0	2	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	t0011	2759	1	0	1	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	t0012	2759	1	1	0	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	t0013	2759	1	1	0	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	t0014	2759	1	1	0	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	t0015	2759	1	0	0	1	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	t0016	2759	1	1	0	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	t0017	2759	1	1	0	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2B_chr11_118157806_118181639	0/1	t0001	4287	183	8	30	119	4	21	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	1/0	t0002	4290	71	1	22	18	11	18	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0003	4287	23	23	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0004	4290	19	3	4	9	1	2	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0005	4287	18	0	1	17	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0006	4288	11	0	0	11	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0007	4284	10	3	5	0	0	2	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0008	4287	9	9	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0009	4286	7	0	1	3	0	3	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0010	4284	6	6	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0011	4287	6	4	2	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0012	4291	5	0	4	0	0	1	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0013	4289	4	4	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0014	4288	4	0	0	4	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0015	4287	4	0	4	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0016	4287	4	3	1	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0017	4288	3	0	0	3	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0018	4287	3	3	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0019	4288	3	2	1	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0020	4288	3	3	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0021	4289	3	3	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0022	4284	2	1	1	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0023	4291	2	0	0	2	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0024	4289	2	2	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0025	4287	2	0	0	2	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0026	4288	2	2	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0027	4289	2	2	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0028	4283	2	0	1	0	1	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0029	4289	1	0	0	1	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0030	4287	1	1	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0031	4287	1	1	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639