JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCN3B_chr11_123624188_123659624	0/0	t0046	5032	1	1	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0047	5032	1	1	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0048	5036	1	0	1	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0049	5036	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0050	5037	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0051	5036	1	0	0	0	0	1	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0052	5036	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0053	5036	1	1	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0054	5036	1	1	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0055	5036	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0056	5036	1	1	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0057	5036	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0058	5036	1	1	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0059	5036	1	0	1	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0060	5036	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0061	5036	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0062	5036	1	1	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0063	5036	1	1	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0064	5032	1	1	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0065	5036	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0066	5036	1	0	1	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0067	5036	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0068	5037	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0069	5036	1	1	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0070	5036	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0071	5036	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0072	5036	1	0	1	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0073	5036	1	0	0	0	0	1	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0074	5036	1	1	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0075	5036	1	1	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0076	5036	1	0	1	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0077	5036	1	1	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0078	5036	1	1	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN4A_chr17_63933554_63977918	0/1	t0001	2307	122	4	24	67	11	15	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	1/0	t0002	2295	121	4	30	71	3	12	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0003	2321	22	22	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0004	2297	20	17	3	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0005	2321	9	8	1	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0006	2321	8	7	1	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0007	2321	6	6	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0008	2321	5	4	1	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0009	2321	5	5	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0010	2297	4	1	2	0	1	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0011	2307	4	3	1	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0012	2307	3	0	1	0	1	1	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0013	2295	3	0	0	3	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0014	2321	3	3	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0015	2295	2	0	0	0	0	2	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0016	2321	2	1	1	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0017	2307	2	2	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918