Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BAIAP2_chr17_81030151_81122434	0/0	t0048	1705	1	1	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	t0049	1700	1	1	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP3_chr16_1328645_1354439	0/1	t0001	1072	162	28	19	87	9	18	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0002	1073	115	14	37	37	8	19	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0003	1072	24	20	3	1	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	1/0	t0004	1073	6	0	3	0	1	1	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0005	1072	5	1	1	0	0	3	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0006	1072	4	4	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0007	1072	4	4	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0008	1073	2	0	1	0	0	1	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0009	1073	2	2	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0010	1072	2	2	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0011	1072	2	2	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0012	1072	2	0	0	2	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0013	1072	2	2	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0014	1072	2	0	1	0	0	1	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0015	1072	2	0	0	0	0	2	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0016	1072	2	2	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0017	1073	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0018	1073	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0019	1072	1	0	0	0	0	1	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0020	1072	1	0	0	1	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0021	1073	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0022	1073	1	0	1	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0023	1073	1	0	1	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0024	1072	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0025	1072	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0026	1072	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0027	1072	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0028	1072	1	0	0	1	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0029	1072	1	0	1	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0030	1072	1	0	0	1	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0031	1072	1	0	0	1	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0032	1072	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0033	1072	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0034	1072	1	0	0	1	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0035	1072	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	t0036	1073	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAK1_chr6_33567552_33585276	0/0	t0001	1535	294	46	56	140	13	39	copy fasta	BAK1	chr6	33567552	33585276
BAK1_chr6_33567552_33585276	1/1	t0002	1535	94	23	19	41	5	4	copy fasta	BAK1	chr6	33567552	33585276
BAK1_chr6_33567552_33585276	0/0	t0003	1535	18	17	1	0	0	0	copy fasta	BAK1	chr6	33567552	33585276
BAK1_chr6_33567552_33585276	0/0	t0004	1535	7	0	0	7	0	0	copy fasta	BAK1	chr6	33567552	33585276
BAK1_chr6_33567552_33585276	0/0	t0005	1535	7	6	1	0	0	0	copy fasta	BAK1	chr6	33567552	33585276
BAK1_chr6_33567552_33585276	0/0	t0006	1535	4	0	0	4	0	0	copy fasta	BAK1	chr6	33567552	33585276
BAK1_chr6_33567552_33585276	0/0	t0007	1535	3	1	1	1	0	0	copy fasta	BAK1	chr6	33567552	33585276
BAK1_chr6_33567552_33585276	0/0	t0008	1535	2	2	0	0	0	0	copy fasta	BAK1	chr6	33567552	33585276
BAK1_chr6_33567552_33585276	0/0	t0009	1535	2	0	0	1	0	1	copy fasta	BAK1	chr6	33567552	33585276
BAK1_chr6_33567552_33585276	0/0	t0010	1535	1	0	0	1	0	0	copy fasta	BAK1	chr6	33567552	33585276
BAK1_chr6_33567552_33585276	0/0	t0011	1535	1	0	0	1	0	0	copy fasta	BAK1	chr6	33567552	33585276
BAK1_chr6_33567552_33585276	0/0	t0012	1535	1	1	0	0	0	0	copy fasta	BAK1	chr6	33567552	33585276