JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCN4A_chr17_63933554_63977918	0/0	t0018	2321	2	2	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0019	2307	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0020	2295	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0021	2307	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0022	2297	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0023	2305	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0024	2321	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0025	2307	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0026	2307	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0027	2321	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0028	2321	1	0	1	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0029	2321	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0030	2307	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	t0031	2321	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4B_chr11_118128377_118157823	0/1	t0001	3800	70	21	15	25	4	4	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0002	3801	63	0	0	48	1	14	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0003	3812	57	6	14	30	3	4	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0004	3800	42	3	19	13	5	2	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0005	3813	27	5	5	10	0	7	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0006	3801	25	0	0	25	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0007	3802	24	0	6	12	1	5	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0008	3801	17	0	4	11	2	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0009	3801	15	2	4	8	0	1	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0010	3801	15	0	3	10	1	1	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0011	3801	10	9	1	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	1/0	t0012	3801	8	4	2	0	0	1	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0013	3802	7	7	0	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0014	3812	6	6	0	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0015	3801	6	6	0	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0016	3802	6	3	2	1	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0017	3801	4	3	1	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0018	3802	4	0	0	4	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0019	3800	3	3	0	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0020	3801	3	0	0	3	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0021	3800	2	0	2	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0022	3801	2	0	0	0	0	2	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0023	3812	2	2	0	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0024	3800	1	1	0	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0025	3801	1	1	0	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0026	3800	1	0	0	0	1	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0027	3800	1	0	0	1	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0028	3800	1	1	0	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0029	3800	1	0	0	1	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0030	3800	1	0	0	1	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0031	3800	1	0	0	0	0	1	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0032	3800	1	1	0	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0033	3801	1	1	0	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0034	3801	1	0	1	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0035	3801	1	1	0	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0036	3801	1	1	0	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823