JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCN8A_chr12_51586233_51817864	0/0	t0022	5610	1	1	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0023	5617	1	0	0	1	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0024	5614	1	1	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0025	5618	1	1	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0026	5617	1	0	0	1	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0027	5617	1	0	0	0	0	1	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0028	5617	1	1	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0029	5617	1	0	0	1	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0030	5617	1	0	0	1	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN9A_chr2_166190185_166380944	0/1	t0001	3779	114	19	20	57	4	13	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0002	3790	54	5	13	30	1	5	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0003	3786	24	0	13	11	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	1/0	t0004	3786	22	3	8	5	1	4	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0005	3790	17	7	1	6	1	2	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0006	3791	8	8	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0007	3787	7	6	1	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0008	3790	5	2	2	0	0	1	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0009	3779	5	5	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0010	3790	4	0	0	4	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0011	3779	3	3	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0012	3787	3	2	1	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0013	3787	3	3	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0014	3779	2	0	0	2	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0015	3791	2	0	0	1	0	1	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0016	3779	2	2	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0017	3790	2	0	2	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0018	3787	2	2	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0019	3779	1	1	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0020	3786	1	0	0	1	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0021	3779	1	1	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0022	3787	1	1	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0023	3786	1	0	1	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0024	3779	1	1	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0025	3790	1	0	0	1	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0026	3779	1	0	0	0	1	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0027	3790	1	0	1	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0028	3790	1	0	1	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0029	3779	1	0	0	0	0	1	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0030	3779	1	0	0	1	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0031	3790	1	0	0	1	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0032	3779	1	1	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0033	3776	1	1	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0034	3787	1	1	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	t0035	3790	1	0	0	0	0	1	copy fasta	SCN9A	chr2	166190185	166380944
SCNM1_chr1_151161144_151175296	0/1	t0001	1221	231	43	49	106	4	28	copy fasta	SCNM1	chr1	151161144	151175296
SCNM1_chr1_151161144_151175296	0/0	t0002	1220	71	27	15	17	7	5	copy fasta	SCNM1	chr1	151161144	151175296
SCNM1_chr1_151161144_151175296	1/0	t0003	1221	33	13	1	16	0	2	copy fasta	SCNM1	chr1	151161144	151175296
SCNM1_chr1_151161144_151175296	0/0	t0004	1222	12	0	1	9	0	2	copy fasta	SCNM1	chr1	151161144	151175296
SCNM1_chr1_151161144_151175296	0/0	t0005	1221	10	0	6	0	4	0	copy fasta	SCNM1	chr1	151161144	151175296
SCNM1_chr1_151161144_151175296	0/0	t0006	1221	7	4	0	0	1	2	copy fasta	SCNM1	chr1	151161144	151175296