JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCNM1_chr1_151161144_151175296	0/0	t0007	1220	4	4	0	0	0	0	copy fasta	SCNM1	chr1	151161144	151175296
SCNM1_chr1_151161144_151175296	0/0	t0008	1211	3	0	0	0	0	3	copy fasta	SCNM1	chr1	151161144	151175296
SCNM1_chr1_151161144_151175296	0/0	t0009	1222	2	2	0	0	0	0	copy fasta	SCNM1	chr1	151161144	151175296
SCNM1_chr1_151161144_151175296	0/0	t0010	1220	1	1	0	0	0	0	copy fasta	SCNM1	chr1	151161144	151175296
SCNM1_chr1_151161144_151175296	0/0	t0011	1220	1	1	0	0	0	0	copy fasta	SCNM1	chr1	151161144	151175296
SCNM1_chr1_151161144_151175296	0/0	t0012	1221	1	1	0	0	0	0	copy fasta	SCNM1	chr1	151161144	151175296
SCNM1_chr1_151161144_151175296	0/0	t0013	1221	1	1	0	0	0	0	copy fasta	SCNM1	chr1	151161144	151175296
SCNM1_chr1_151161144_151175296	0/0	t0014	1222	1	1	0	0	0	0	copy fasta	SCNM1	chr1	151161144	151175296
SCNN1A_chr12_6341847_6380563	0/0	t0001	1140	324	67	50	168	6	33	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	1/1	t0002	1140	80	6	31	22	8	11	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	t0003	1136	22	10	0	12	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	t0004	1140	5	5	0	0	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	t0005	1140	4	4	0	0	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	t0006	1136	3	2	1	0	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	t0007	1140	3	0	0	3	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	t0008	1140	2	2	0	0	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	t0009	1140	1	0	0	1	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	t0010	1140	1	0	0	1	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	t0011	1140	1	0	0	0	0	1	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	t0012	1140	1	0	0	0	1	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	t0013	1140	1	0	0	1	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	t0014	1140	1	1	0	0	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	t0015	1140	1	1	0	0	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	t0016	1140	1	0	0	0	1	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	t0017	1140	1	0	1	0	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	t0018	1140	1	0	1	0	0	0	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1A_chr12_6341847_6380563	0/0	t0019	1140	1	0	0	0	0	1	copy fasta	SCNN1A	chr12	6341847	6380563
SCNN1B_chr16_23297302_23386294	1/1	t0001	638	299	81	55	108	16	37	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	t0002	638	2	2	0	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	t0003	638	1	1	0	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	t0004	638	1	1	0	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	t0005	638	1	0	1	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	t0006	638	1	0	0	0	0	1	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1B_chr16_23297302_23386294	0/0	t0007	638	1	1	0	0	0	0	copy fasta	SCNN1B	chr16	23297302	23386294
SCNN1D_chr1_1275436_1297025	1/1	t0001	642	169	31	45	57	10	24	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	t0002	642	45	2	16	18	2	7	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	t0003	642	33	4	3	25	0	1	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	t0004	642	15	15	0	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	t0005	642	6	0	0	6	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	t0006	641	5	4	1	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	t0007	642	4	0	2	2	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	t0008	642	4	2	0	2	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	t0009	642	3	3	0	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	t0010	641	2	2	0	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	t0011	642	2	1	1	0	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	t0012	641	1	0	0	1	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1D_chr1_1275436_1297025	0/0	t0013	642	1	0	0	1	0	0	copy fasta	SCNN1D	chr1	1275436	1297025
SCNN1G_chr16_23177745_23221883	1/0	t0001	1528	164	35	35	62	8	23	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/1	t0002	1528	44	18	10	7	4	4	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	t0003	1528	35	1	15	12	1	6	copy fasta	SCNN1G	chr16	23177745	23221883