JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCNN1G_chr16_23177745_23221883	0/0	t0004	1528	22	3	4	13	1	1	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	t0005	1528	18	7	4	3	0	4	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	t0006	1528	12	12	0	0	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	t0007	1528	8	7	1	0	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	t0008	1528	6	6	0	0	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	t0009	1528	3	0	0	0	0	3	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	t0010	1528	1	0	0	1	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	t0011	1528	1	0	1	0	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	t0012	1528	1	0	0	0	0	1	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	t0013	1528	1	1	0	0	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	t0014	1528	1	1	0	0	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	t0015	1528	1	0	0	1	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	t0016	1528	1	0	0	1	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCNN1G_chr16_23177745_23221883	0/0	t0017	1528	1	1	0	0	0	0	copy fasta	SCNN1G	chr16	23177745	23221883
SCO1_chr17_10667474_10702533	0/0	t0001	8667	57	4	16	28	4	5	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/1	t0002	8671	35	4	13	14	1	2	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0003	8668	28	2	8	14	1	3	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0004	8672	17	7	3	3	2	2	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0005	8672	15	0	0	14	0	1	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0006	8671	14	0	0	13	0	1	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0007	8673	12	1	7	0	1	3	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0008	8669	12	0	0	12	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0009	8671	9	0	4	5	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0010	8672	8	0	1	7	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0011	8665	8	8	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0012	8672	7	0	3	1	0	3	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0013	8668	6	0	0	6	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0014	8667	6	0	0	6	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0015	8671	5	5	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0016	8668	5	0	0	5	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0017	8670	5	4	1	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0018	8667	5	0	0	5	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0019	8676	4	4	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0020	8673	4	0	0	4	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0021	8673	4	0	4	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0022	8669	3	0	0	3	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0023	8667	3	0	0	3	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0024	8677	3	3	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0025	8672	3	0	0	3	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0026	8671	3	2	1	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0027	8666	3	3	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0028	8665	3	3	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0029	8668	2	0	0	2	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0030	8666	2	0	0	0	0	2	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0031	8677	2	2	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0032	8676	2	2	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0033	8676	2	2	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0034	8672	2	0	0	1	0	1	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0035	8673	2	2	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0036	8672	2	0	1	0	0	1	copy fasta	SCO1	chr17	10667474	10702533