JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCO1_chr17_10667474_10702533	0/0	t0037	8672	2	0	0	2	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0038	8672	2	0	0	2	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0039	8671	2	0	0	0	0	2	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0040	8671	2	0	0	2	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0041	8670	2	0	0	0	0	2	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0042	8670	2	0	0	2	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0043	8671	2	0	2	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0044	8669	2	0	1	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0045	8668	2	2	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0046	8667	2	0	0	2	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0047	8666	2	0	0	2	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0048	8667	2	2	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0049	8668	2	0	0	0	1	1	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0050	8665	2	2	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0051	8671	2	0	0	2	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0052	8666	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0053	8670	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0054	8667	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0055	8667	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0056	8666	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0057	8679	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0058	8678	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0059	8679	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0060	8675	1	0	1	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0061	8679	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0062	8678	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0063	8671	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0064	8671	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0065	8674	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0066	8674	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0067	8673	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0068	8672	1	0	0	0	1	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0069	8673	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0070	8673	1	0	0	0	0	1	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0071	8674	1	0	0	0	0	1	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0072	8672	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0073	8672	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0074	8672	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0075	8673	1	0	1	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0076	8673	1	0	0	0	0	1	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0077	8673	1	0	0	0	0	1	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0078	8671	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0079	8671	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0080	8672	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0081	8672	1	0	0	0	0	1	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	1/0	t0082	8672	1	0	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0083	8672	1	0	0	0	1	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0084	8671	1	0	1	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0085	8671	1	0	1	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0086	8670	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533