JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCO1_chr17_10667474_10702533	0/0	t0087	8672	1	0	1	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0088	8673	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0089	8671	1	0	1	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0090	8670	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0091	8671	1	0	0	0	0	1	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0092	8673	1	0	0	0	0	1	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0093	8671	1	0	1	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0094	8668	1	0	1	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0095	8669	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0096	8670	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0097	8669	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0098	8668	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0099	8668	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0100	8671	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0101	8668	1	0	1	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0102	8668	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0103	8668	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0104	8668	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0105	8668	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0106	8667	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0107	8667	1	0	0	0	0	1	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0108	8668	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0109	8667	1	0	1	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0110	8668	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0111	8667	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0112	8666	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0113	8668	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0114	8666	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0115	8666	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0116	8667	1	0	0	0	0	1	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0117	8666	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0118	8666	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0119	8666	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0120	8667	1	0	0	0	0	1	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0121	8666	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0122	8666	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0123	8667	1	0	0	0	1	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0124	8667	1	0	1	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0125	8667	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0126	8667	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0127	8666	1	0	1	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0128	8669	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0129	8667	1	0	0	0	1	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0130	8666	1	0	0	1	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0131	8668	1	0	0	0	0	1	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0132	8671	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0133	8670	1	1	0	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO1_chr17_10667474_10702533	0/0	t0134	8668	1	0	1	0	0	0	copy fasta	SCO1	chr17	10667474	10702533
SCO2_chr22_50518568_50530598	0/1	t0001	184	231	39	43	115	5	28	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	1/0	t0002	184	91	36	24	14	8	8	copy fasta	SCO2	chr22	50518568	50530598