JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCO2_chr22_50518568_50530598	0/0	t0003	184	67	6	9	44	2	6	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	0/0	t0004	188	17	15	2	0	0	0	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	0/0	t0005	184	2	2	0	0	0	0	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	0/0	t0006	184	1	0	0	0	1	0	copy fasta	SCO2	chr22	50518568	50530598
SCO2_chr22_50518568_50530598	0/0	t0007	184	1	0	0	1	0	0	copy fasta	SCO2	chr22	50518568	50530598
SCOC_chr4_140368646_140390728	0/0	t0001	4747	150	26	43	53	7	21	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	1/0	t0002	4747	102	30	17	35	2	17	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0003	4747	48	2	9	33	3	1	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0004	4747	24	0	0	24	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0005	4747	14	0	6	8	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0006	4747	12	2	3	1	2	4	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0007	4747	7	0	0	7	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0008	4747	7	7	0	0	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0009	4747	7	7	0	0	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0010	4745	6	5	1	0	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0011	4747	5	0	0	5	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0012	4748	4	0	0	4	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0013	4747	3	0	0	3	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0014	4747	2	2	0	0	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0015	4747	2	0	0	2	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0016	4747	2	2	0	0	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0017	4747	2	0	0	2	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0018	4747	2	0	0	0	2	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0019	4747	2	2	0	0	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/1	t0020	4745	2	1	0	0	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0021	4747	1	1	0	0	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0022	4747	1	0	0	0	0	1	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0023	4747	1	0	0	1	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0024	4747	1	0	0	1	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0025	4747	1	1	0	0	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0026	4747	1	1	0	0	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0027	4747	1	1	0	0	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0028	4747	1	1	0	0	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0029	4747	1	0	0	1	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0030	4747	1	0	1	0	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0031	4747	1	0	0	1	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0032	4747	1	1	0	0	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0033	4747	1	1	0	0	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0034	4747	1	1	0	0	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCOC_chr4_140368646_140390728	0/0	t0035	4747	1	0	0	1	0	0	copy fasta	SCOC	chr4	140368646	140390728
SCP2D1_chr20_18808783_18819378	1/1	t0001	126	447	91	88	200	18	48	copy fasta	SCP2D1	chr20	18808783	18819378
SCP2D1_chr20_18808783_18819378	0/0	t0002	126	7	7	0	0	0	0	copy fasta	SCP2D1	chr20	18808783	18819378
SCP2_chr1_52922276_53056698	1/1	t0001	1116	148	31	33	59	5	18	copy fasta	SCP2	chr1	52922276	53056698
SCP2_chr1_52922276_53056698	0/0	t0002	1119	47	11	0	34	1	1	copy fasta	SCP2	chr1	52922276	53056698
SCP2_chr1_52922276_53056698	0/0	t0003	1119	38	10	8	17	0	3	copy fasta	SCP2	chr1	52922276	53056698
SCP2_chr1_52922276_53056698	0/0	t0004	1116	14	13	1	0	0	0	copy fasta	SCP2	chr1	52922276	53056698
SCP2_chr1_52922276_53056698	0/0	t0005	1116	9	0	0	9	0	0	copy fasta	SCP2	chr1	52922276	53056698
SCP2_chr1_52922276_53056698	0/0	t0006	1119	8	8	0	0	0	0	copy fasta	SCP2	chr1	52922276	53056698
SCP2_chr1_52922276_53056698	0/0	t0007	1116	3	3	0	0	0	0	copy fasta	SCP2	chr1	52922276	53056698
SCP2_chr1_52922276_53056698	0/0	t0008	1116	3	3	0	0	0	0	copy fasta	SCP2	chr1	52922276	53056698