JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCP2_chr1_52922276_53056698	0/0	t0009	1116	2	2	0	0	0	0	copy fasta	SCP2	chr1	52922276	53056698
SCP2_chr1_52922276_53056698	0/0	t0010	1119	2	2	0	0	0	0	copy fasta	SCP2	chr1	52922276	53056698
SCP2_chr1_52922276_53056698	0/0	t0011	1116	2	2	0	0	0	0	copy fasta	SCP2	chr1	52922276	53056698
SCP2_chr1_52922276_53056698	0/0	t0012	1116	1	1	0	0	0	0	copy fasta	SCP2	chr1	52922276	53056698
SCP2_chr1_52922276_53056698	0/0	t0013	1116	1	1	0	0	0	0	copy fasta	SCP2	chr1	52922276	53056698
SCP2_chr1_52922276_53056698	0/0	t0014	1103	1	0	0	1	0	0	copy fasta	SCP2	chr1	52922276	53056698
SCP2_chr1_52922276_53056698	0/0	t0015	1116	1	1	0	0	0	0	copy fasta	SCP2	chr1	52922276	53056698
SCPEP1_chr17_56973131_57011768	1/1	t0001	563	312	90	62	112	11	35	copy fasta	SCPEP1	chr17	56973131	57011768
SCPEP1_chr17_56973131_57011768	0/0	t0002	563	65	7	8	43	3	4	copy fasta	SCPEP1	chr17	56973131	57011768
SCPEP1_chr17_56973131_57011768	0/0	t0003	563	1	0	0	0	0	1	copy fasta	SCPEP1	chr17	56973131	57011768
SCPEP1_chr17_56973131_57011768	0/0	t0004	563	1	1	0	0	0	0	copy fasta	SCPEP1	chr17	56973131	57011768
SCPEP1_chr17_56973131_57011768	0/0	t0005	563	1	0	0	1	0	0	copy fasta	SCPEP1	chr17	56973131	57011768
SCRG1_chr4_173379701_173404116	0/0	t0001	3704	118	15	22	64	6	11	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/1	t0002	3705	100	12	23	47	3	14	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0003	3703	19	6	7	5	0	1	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	1/0	t0004	3704	14	12	0	1	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0005	3705	14	2	4	6	0	2	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0006	3704	13	0	0	12	0	1	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0007	3706	8	4	0	0	3	1	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0008	3705	8	6	0	2	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0009	3705	8	0	0	7	0	1	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0010	3703	8	2	1	5	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0011	3705	7	7	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0012	3705	5	2	0	0	0	3	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0013	3705	4	0	1	0	2	1	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0014	3704	3	3	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0015	3702	3	3	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0016	3702	3	3	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0017	3702	3	3	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0018	3724	2	2	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0019	3702	2	0	1	1	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0020	3705	2	0	2	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0021	3706	2	0	1	0	0	1	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0022	3706	2	0	0	0	0	2	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0023	3705	2	2	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0024	3705	2	2	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0025	3704	2	0	0	2	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0026	3703	2	0	1	1	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0027	3704	1	1	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0028	3704	1	1	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0029	3704	1	1	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0030	3705	1	0	0	0	0	1	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0031	3704	1	0	0	1	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0032	3705	1	0	0	1	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0033	3706	1	1	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0034	3706	1	1	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0035	3705	1	1	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0036	3706	1	1	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0037	3705	1	0	1	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0038	3704	1	0	0	1	0	0	copy fasta	SCRG1	chr4	173379701	173404116