Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BAMBI_chr10_28672521_28687932	0/1	t0001	908	202	41	38	94	9	19	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0002	904	99	3	20	61	2	13	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	1/0	t0003	909	53	12	13	11	4	12	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0004	908	41	15	3	22	0	1	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0005	908	9	8	1	0	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0006	909	5	4	1	0	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0007	904	4	4	0	0	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0008	904	3	0	2	0	1	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0009	908	3	3	0	0	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0010	908	2	2	0	0	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0011	904	2	0	0	2	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0012	908	2	0	0	2	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0013	908	2	2	0	0	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0014	908	1	0	0	1	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0015	904	1	0	0	0	0	1	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0016	908	1	1	0	0	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0017	908	1	1	0	0	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0018	908	1	1	0	0	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0019	908	1	0	0	1	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0020	908	1	1	0	0	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0021	908	1	0	0	1	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	t0022	908	1	0	0	1	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BANF1_chr11_65997503_66009149	1/1	t0001	462	368	88	55	167	12	44	copy fasta	BANF1	chr11	65997503	66009149
BANF1_chr11_65997503_66009149	0/0	t0002	462	5	4	1	0	0	0	copy fasta	BANF1	chr11	65997503	66009149
BANF1_chr11_65997503_66009149	0/0	t0003	462	1	0	0	1	0	0	copy fasta	BANF1	chr11	65997503	66009149
BANF2_chr20_17694966_17740871	0/1	t0001	317	297	23	58	164	15	36	copy fasta	BANF2	chr20	17694966	17740871
BANF2_chr20_17694966_17740871	1/0	t0002	317	101	68	15	8	3	6	copy fasta	BANF2	chr20	17694966	17740871
BANF2_chr20_17694966_17740871	0/0	t0003	317	1	1	0	0	0	0	copy fasta	BANF2	chr20	17694966	17740871
BANF2_chr20_17694966_17740871	0/0	t0004	317	1	0	1	0	0	0	copy fasta	BANF2	chr20	17694966	17740871
BANK1_chr4_101785730_102079812	1/0	t0001	965	158	31	27	79	1	19	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/1	t0002	969	56	1	17	32	1	4	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	t0003	965	50	29	7	13	0	1	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	t0004	965	13	10	3	0	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	t0005	965	4	0	4	0	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	t0006	965	2	2	0	0	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	t0007	965	1	1	0	0	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANP_chr16_87946434_88082316	0/1	t0001	846	112	40	19	37	3	12	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	t0002	846	65	2	18	33	2	10	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	t0003	886	58	7	5	29	2	15	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	t0004	847	31	4	14	11	0	2	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	1/0	t0005	806	28	25	0	0	0	2	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	t0006	846	14	1	5	7	1	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	t0007	807	11	7	1	0	0	3	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	t0008	846	9	0	0	9	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	t0009	886	6	0	2	3	0	1	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	t0010	886	5	5	0	0	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	t0011	806	3	0	0	3	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	t0012	847	2	0	1	0	0	1	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	t0013	846	1	0	0	1	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	t0014	846	1	0	0	1	0	0	copy fasta	BANP	chr16	87946434	88082316