JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCRG1_chr4_173379701_173404116	0/0	t0039	3704	1	0	0	1	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0040	3704	1	1	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0041	3705	1	1	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0042	3704	1	0	1	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0043	3704	1	0	1	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0044	3703	1	0	0	1	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0045	3705	1	0	0	0	0	1	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0046	3704	1	0	0	1	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0047	3704	1	1	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0048	3702	1	0	0	1	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0049	3700	1	1	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRG1_chr4_173379701_173404116	0/0	t0050	3702	1	1	0	0	0	0	copy fasta	SCRG1	chr4	173379701	173404116
SCRIB_chr8_143785925_143820773	0/1	t0001	640	378	88	71	156	18	44	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	t0002	655	4	4	0	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	t0003	640	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	t0004	650	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	t0005	640	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	t0006	640	1	0	1	0	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRIB_chr8_143785925_143820773	0/0	t0007	640	1	0	0	1	0	0	copy fasta	SCRIB	chr8	143785925	143820773
SCRN1_chr7_29915109_29994801	1/0	t0001	4009	65	34	13	13	2	2	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0002	4007	59	4	9	31	5	10	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0003	4009	34	11	9	7	3	4	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0004	4006	22	2	2	17	0	1	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0005	4007	18	0	4	14	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0006	4009	17	5	5	4	1	2	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0007	4007	10	0	8	0	1	1	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0008	4009	5	0	0	4	0	1	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0009	4006	5	3	1	0	0	1	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0010	4009	4	4	0	0	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0011	4009	3	3	0	0	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0012	4007	3	3	0	0	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0013	4009	3	2	1	0	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0014	4009	2	0	1	0	1	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0015	4009	2	0	0	2	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0016	4009	2	0	0	2	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0017	4009	2	2	0	0	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0018	4007	1	0	0	1	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0019	4009	1	0	0	1	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0020	4009	1	0	0	1	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0021	3995	1	0	0	1	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0022	4009	1	0	0	0	1	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0023	4009	1	1	0	0	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0024	4009	1	0	0	0	0	1	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0025	4009	1	0	0	1	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0026	4007	1	0	0	1	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0027	4007	1	0	0	1	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0028	4007	1	0	0	0	0	1	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0029	4007	1	0	0	1	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0030	4007	1	0	0	1	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0031	4007	1	0	1	0	0	0	copy fasta	SCRN1	chr7	29915109	29994801