JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCRN1_chr7_29915109_29994801	0/1	t0032	4007	1	0	0	0	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0033	4007	1	0	0	1	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0034	4006	1	1	0	0	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN1_chr7_29915109_29994801	0/0	t0035	4009	1	1	0	0	0	0	copy fasta	SCRN1	chr7	29915109	29994801
SCRN2_chr17_47832692_47846273	1/1	t0001	219	309	55	64	137	13	38	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	t0002	219	86	45	18	14	3	6	copy fasta	SCRN2	chr17	47832692	47846273
SCRN2_chr17_47832692_47846273	0/0	t0003	219	3	0	0	3	0	0	copy fasta	SCRN2	chr17	47832692	47846273
SCRN3_chr2_174390730_174434575	1/0	t0001	1778	230	51	60	77	11	30	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/1	t0002	1778	70	4	9	45	2	9	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	t0003	1778	18	17	1	0	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	t0004	1778	17	1	6	0	4	6	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	t0005	1778	8	7	0	1	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	t0006	1778	5	5	0	0	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	t0007	1778	2	2	0	0	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	t0008	1778	2	0	0	2	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	t0009	1778	2	0	0	0	0	2	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	t0010	1778	2	0	0	2	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	t0011	1778	1	1	0	0	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	t0012	1778	1	0	0	0	1	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	t0013	1778	1	1	0	0	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	t0014	1778	1	0	1	0	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	t0015	1778	1	0	1	0	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	t0016	1778	1	0	0	0	0	1	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	t0017	1778	1	0	0	1	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRN3_chr2_174390730_174434575	0/0	t0018	1778	1	1	0	0	0	0	copy fasta	SCRN3	chr2	174390730	174434575
SCRT1_chr8_144325565_144341482	0/0	t0001	2933	129	26	33	43	7	20	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0002	2934	39	5	8	20	2	4	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0003	2935	36	5	7	21	1	2	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0004	2934	34	6	12	14	0	2	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0005	2933	28	8	5	12	0	3	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/1	t0006	2934	20	0	5	13	1	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0007	2935	18	1	5	9	2	1	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0008	2934	9	6	1	2	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0009	2935	7	2	1	2	0	2	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0010	2934	7	3	0	3	0	1	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0011	2933	6	6	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0012	2934	5	0	0	0	3	2	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0013	2934	4	4	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0014	2934	2	2	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0015	2935	2	1	0	0	0	1	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0016	2934	2	0	0	2	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0017	2933	2	0	0	2	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0018	2933	2	2	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0019	2935	2	0	1	0	1	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0020	2936	2	0	0	2	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0021	2936	2	0	0	2	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0022	2933	2	0	2	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0023	2933	1	0	0	0	0	1	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0024	2936	1	1	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0025	2936	1	1	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482