JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCRT1_chr8_144325565_144341482	0/0	t0026	2934	1	1	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0027	2936	1	1	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0028	2935	1	1	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0029	2935	1	0	0	0	0	1	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	1/0	t0030	2934	1	0	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0031	2934	1	1	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0032	2934	1	1	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0033	2935	1	0	0	0	0	1	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0034	2934	1	0	0	0	0	1	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0035	2934	1	1	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0036	2933	1	0	0	1	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0037	2933	1	0	0	1	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0038	2933	1	1	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0039	2933	1	0	0	1	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0040	2934	1	0	0	0	1	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0041	2934	1	0	0	1	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0042	2933	1	0	0	1	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0043	2935	1	0	0	0	0	1	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0044	2934	1	0	0	0	0	1	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0045	2934	1	0	0	1	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0046	2935	1	0	0	1	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0047	2935	1	0	0	1	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0048	2934	1	0	0	1	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0049	2934	1	0	0	1	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0050	2934	1	0	0	1	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0051	2933	1	0	0	1	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0052	2933	1	1	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0053	2934	1	1	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0054	2934	1	1	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0055	2935	1	1	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0056	2933	1	1	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0057	2933	1	0	0	0	0	1	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0058	2934	1	0	0	1	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0059	2934	1	1	0	0	0	0	copy fasta	SCRT1	chr8	144325565	144341482
SCRT1_chr8_144325565_144341482	0/0	t0060	2940	1	0	0	0	0	1	copy fasta	SCRT1	chr8	144325565	144341482
SCRT2_chr20_656596_680802	1/1	t0001	2277	166	39	26	79	6	14	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0002	2280	101	4	21	54	5	17	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0003	2277	67	14	12	33	3	5	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0004	2277	14	6	0	6	0	2	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0005	2280	13	1	0	10	0	2	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0006	2277	10	2	8	0	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0007	2280	9	0	0	5	0	4	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0008	2277	8	7	1	0	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0009	2277	8	7	1	0	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0010	2280	7	1	5	0	0	1	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0011	2277	6	0	5	0	0	1	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0012	2277	6	5	1	0	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0013	2277	5	0	0	5	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0014	2280	5	0	0	5	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0015	2280	5	0	0	5	0	0	copy fasta	SCRT2	chr20	656596	680802